RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PCYOX1Q9UHG3 505 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 RSPH14Q9UHP6 348 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CNOT7Q9UIV1 285 aaKnown RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF214Q9UL59 606 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 TMEM150BA6NC51 233 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 TMEM110-MUSTN1A8MSY1 372 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SPATA31C2B4DYI2 1134 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 STBD1O95210 358 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 RECKO95980 971 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PIGRP01833 764 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 MMEP08473 750 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 COMTP21964 271 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SLC1A1P43005 524 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 NAMPTP43490 491 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 POLGP54098 1239 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 RWDD2BP57060 319 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ACTR2P61160 394 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 HIC1Q14526 733 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 MESDQ14696 234 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PSMD6Q15008 389 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CYP1B1Q16678 543 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CLEC16AQ2KHT3 1053 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 TBC1D10BQ4KMP7 808 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 NBPF12Q5TAG4 269 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SWSAP1Q6NVH7 229 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ABHD15Q6UXT9 468 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CATSPERGQ6ZRH7 1159 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 MICALCLQ6ZW33 695 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SLC47A2Q86VL8 602 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 JAMLQ86YT9 394 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 C12orf50Q8NA57 414 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 C3orf20Q8ND61 904 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 BCAS4Q8TDM0 211 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SEMA4DQ92854 862 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CD101Q93033 1021 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ZBTB9Q96C00 473 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 FNBP1Q96RU3 617 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CEP89Q96ST8 783 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 TMUB1Q9BVT8 246 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PLEKHA4Q9H4M7 779 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CYP39A1Q9NYL5 469 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 FBXO40Q9UH90 709 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 LCMT1Q9UIC8 334 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PCDHA3Q9Y5H8 950 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 WDR90Q96KV7 1748 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 A0A0G2JMZ2 1700 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 PASKQ96RG2 1323 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 H0YGN5 161 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 FZD9O00144 591 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 MYO1CO00159 1063 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF862O60290 1169 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 DLATP10515 647 aaKnown RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 KRT5P13647 590 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 PBX2P40425 430 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 HMGCS2P54868 508 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 CLDN10P78369 228 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 DHX9Q08211 1270 aaKnown RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF844Q08AG5 666 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 IFFO1Q0D2I5 559 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 DGKZQ13574 1117 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 TMEM132BQ14DG7 1078 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 EMC2Q15006 297 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 STXBP2Q15833 593 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 UAP1Q16222 522 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 SLC39A4Q6P5W5 647 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 SYDE1Q6ZW31 735 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 SV2AQ7L0J3 742 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 CYFIP1Q7L576 1253 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 SAMD7Q7Z3H4 446 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 DEPTORQ8TB45 409 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 TAS1R2Q8TE23 839 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 ATP8B4Q8TF62 1192 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 BSNDQ8WZ55 320 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 ALG3Q92685 438 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 KAT5Q92993 513 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 MAGOHBQ96A72 148 aaKnown RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 PCDHB18PQ96TA0 734 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 KIFC3Q9BVG8 833 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 PDGFDQ9GZP0 370 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 STMN4Q9H169 189 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 EPN3Q9H201 632 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 RASSF4Q9H2L5 321 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 DPH5Q9H2P9 285 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 CNOT10Q9H9A5 744 aaKnown RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 A1CFQ9NQ94 594 aaKnown RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 RIPK3Q9Y572 518 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 PCDHB2Q9Y5E7 798 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 NFS1Q9Y697 457 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 STYXL1Q9Y6J8 313 aa7.78□□□□□ -1.16
VPS13C-206ENST00000558338 MYH9P35579 1960 aaKnown RBP7.78□□□□□ -1.16
VPS13C-206ENST00000558338 NDUFAB1O14561 156 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 ATG7O95352 703 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 OATP04181 439 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 NUDT17P0C025 328 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 VAMP1P23763 118 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 TBXAS1P24557 533 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 MDH1P40925 334 aaKnown RBP7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PIK3CAP42336 1068 aa7.77□□□□□ -1.17
VPS13C-206ENST00000558338 PEX5P50542 639 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms