RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 PIGRP01833 764 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 DNAJB1P25685 340 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 MSNP26038 577 aaKnown RBP9.44□□□□□ -0.9
USP3-208ENST00000558285 IRS1P35568 1242 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 PBX3P40426 434 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 GTF2BQ00403 316 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 CAMK1Q14012 370 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 SMAD2Q15796 467 aaKnown RBP9.44□□□□□ -0.9
USP3-208ENST00000558285 ATAT1Q5SQI0 421 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 FOXD4L5Q5VV16 416 aaPredicted RBP9.44□□□□□ -0.9
USP3-208ENST00000558285 ANKRD54Q6NXT1 300 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 FUT10Q6P4F1 479 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 FAM173BQ6P4H8 233 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 RTL10Q7L3V2 364 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 DYMQ7RTS9 669 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 NT5DC4Q86YG4 428 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 MAP4K3Q8IVH8 894 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 ADHFE1Q8IWW8 467 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 PDILTQ8N807 584 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 FOXD4L4Q8WXT5 416 aaPredicted RBP9.44□□□□□ -0.9
USP3-208ENST00000558285 STAMQ92783 540 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 CLIC6Q96NY7 704 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 TTPALQ9BTX7 342 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 PANK2Q9BZ23 570 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 PLEKHA4Q9H4M7 779 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 SFXN1Q9H9B4 322 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 PTPRHQ9HD43 1115 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 PANK4Q9NVE7 773 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 HOOK1Q9UJC3 728 aaKnown RBP9.44□□□□□ -0.9
USP3-208ENST00000558285 UBQLN1Q9UMX0 589 aaKnown RBP9.44□□□□□ -0.9
USP3-208ENST00000558285 MEIS3P2A8K0S8 358 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 H7C4K7 107 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 B3GAT3O94766 335 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 GCNT3O95395 438 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 KCNE1P15382 129 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 CYP3A5P20815 502 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 PROZP22891 400 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 KCNQ1P51787 676 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 OSTNP61366 133 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 SNRPFP62306 86 aaKnown RBP9.43□□□□□ -0.9
USP3-208ENST00000558285 ASIC1P78348 528 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 DSG1Q02413 1049 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 PTPN14Q15678 1187 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 ARSHQ5FYA8 562 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 SPECC1Q5M775 1068 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 IER5LQ5T953 404 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 LIN9Q5TKA1 542 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 EEF1DP3Q658K8 133 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 ADALQ6DHV7 355 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 ANKS3Q6ZW76 656 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 GPIHBP1Q8IV16 184 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 GJD3Q8N144 294 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 SMRP1Q8NCR6 262 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 APPL2Q8NEU8 664 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 BEST2Q8NFU1 509 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 SNX27Q96L92 541 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 KIAA1586Q9HCI6 787 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 FNIP2Q9P278 1114 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 CGNQ9P2M7 1197 aaKnown RBP9.43□□□□□ -0.9
USP3-208ENST00000558285 RCOR1Q9UKL0 485 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 DERAQ9Y315 318 aa9.43□□□□□ -0.9
USP3-208ENST00000558285 NPHP3-ACAD11A0A0J9YXS1 232 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 SMIM28A0A1B0GU29 152 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 CASTOR2A6NHX0 329 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 SYN3O14994 580 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 PER2O15055 1255 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 MBTPS2O43462 519 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 ZNF500O60304 480 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 CLASP2O75122 1294 aaKnown RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 UBE4BO95155 1302 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 IL18RAPO95256 599 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 GRIN1Q05586 938 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 SURF1Q15526 300 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 FAM171A1Q5VUB5 890 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 KANK3Q6NY19 840 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 LLGL2Q6P1M3 1020 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 HS2ST1Q7LGA3 356 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 ZNF720Q7Z2F6 126 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 ADGRD2Q7Z7M1 963 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 SFR1Q86XK3 245 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 GOLGA5Q8TBA6 731 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 CACTINQ8WUQ7 758 aaKnown RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 RIN2Q8WYP3 895 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 POMGNT1Q8WZA1 660 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 DHX58Q96C10 678 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 KRTAP3-3Q9BYR6 98 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 KRTAP3-2Q9BYR7 98 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 ASB7Q9H672 318 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 POLD4Q9HCU8 107 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 CNTN3Q9P232 1028 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 HCSTQ9UBK5 93 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 KCNH3Q9ULD8 1083 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 HCFC2Q9Y5Z7 792 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 PVALEFA0A1B0GWK0 134 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 HIDE1A8MVS5 230 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 C2CD2LO14523 706 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 TBX10O75333 385 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 DNM1Q05193 864 aaKnown RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 FOXD4L6Q3SYB3 417 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms