RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 FAM47DPA6NHR8 397 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 RASA4BC9J798 803 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 IPO5O00410 1097 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 LIN7AO14910 233 aaPredicted RBP12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 RASA4O43374 803 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 GH2P01242 217 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 VIL1P09327 827 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 PLS3P13797 630 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 FOXN2P32314 431 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 SLC1A1P43005 524 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 VPS41P49754 854 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 ADCY1Q08828 1119 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 TNIP1Q15025 636 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 PARP6Q2NL67 630 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 RBM26Q5T8P6 1007 aaKnown RBP12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 KRT39Q6A163 491 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 PAXIP1Q6ZW49 1069 aaPredicted RBP12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 ZNF365Q70YC5 407 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 VSIG1Q86XK7 387 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 RELL1Q8IUW5 271 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 KIAA0825Q8IV33 1275 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 CCDC89Q8N998 374 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 ZSWIM2Q8NEG5 633 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 SEMA4DQ92854 862 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 FAM81BQ96LP2 452 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 NT5C1BQ96P26 610 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 LRRC4BQ9NT99 713 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 STARD13Q9Y3M8 1113 aa12.59□□□□□ -0.39
VIPAS39-211ENST00000557658 A0A1W2PRG0 241 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 RBM5P52756 815 aaKnown RBP eCLIP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 POLGP54098 1239 aaPredicted RBP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 NR1H3Q13133 447 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 VPS72Q15906 364 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 CLEC16AQ2KHT3 1053 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 SEPT14Q6ZU15 432 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 FAM47EQ6ZV65 393 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 MIER3Q7Z3K6 550 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 HAUS6Q7Z4H7 955 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 AGGF1Q8N302 714 aaeCLIP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 HELQQ8TDG4 1101 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 PWWP2AQ96N64 755 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 IWS1Q96ST2 819 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 RIT2Q99578 217 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 PAIP2Q9BPZ3 127 aaKnown RBP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 KLRG2A4D1S0 409 aaPredicted RBP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 GOLGA8IPA6NC78 632 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 GOLGA8JA6NMD2 632 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 ADRB2P07550 413 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 GTF2BQ00403 316 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 TMED2Q15363 201 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 IZUMO3Q5VZ72 239 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 CCDC174Q6PII3 467 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 ANKLE1Q8NAG6 615 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 DDX1Q92499 740 aaKnown RBP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 SPDL1Q96EA4 605 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 FOXP3Q9BZS1 431 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 MYLK2Q9H1R3 596 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 LRMDAQ9H2I8 198 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 AVENQ9NQS1 362 aaPredicted RBP12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 USH1CQ9Y6N9 552 aa12.58□□□□□ -0.4
VIPAS39-211ENST00000557658 DDX39AO00148 427 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 SKAP2O75563 359 aaPredicted RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 ABHD2P08910 425 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 GPC3P51654 580 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 WDR4P57081 412 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 LMNB2Q03252 620 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 TAF11Q15544 211 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 GRIPAP1Q4V328 841 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 CAPRIN2Q6IMN6 1127 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 C9orf72Q96LT7 481 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 HERPUD2Q9BSE4 406 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 MRIQ9BWK5 157 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 ST6GALNAC4Q9H4F1 302 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 TMEM8AQ9HCN3 771 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 UBN1Q9NPG3 1134 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 EURLQ9NYK6 297 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 SYNPO2Q9UMS6 1093 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 R3HDM2Q9Y2K5 976 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 COQ4Q9Y3A0 265 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 MRPL11Q9Y3B7 192 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 PCDHAC2Q9Y5I4 1007 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 PPP1R12AO14974 1030 aaPredicted RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 MAGEB2O15479 319 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 GRIN3BO60391 1043 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 NPM3O75607 178 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 SMNDC1O75940 238 aaKnown RBP eCLIP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 P4HBP07237 508 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 RRM1P23921 792 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 YARSP54577 528 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 IRX1P78414 480 aaPredicted RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 SNRNP35Q16560 246 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 CCNG2Q16589 344 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 FAM182BQ5T319 152 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 MICAL1Q8TDZ2 1067 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 MAML1Q92585 1016 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 UTP4Q969X6 686 aaKnown RBP12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 CCDC127Q96BQ5 260 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 ERP27Q96DN0 273 aa12.57□□□□□ -0.4
VIPAS39-211ENST00000557658 TRIM11Q96F44 468 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms