RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TPH2Q8IWU9 490 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 SLFN12Q8IYM2 578 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 NLRP7Q8WX94 980 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 DDX1Q92499 740 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 B3GALT6Q96L58 329 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 TMEM175Q9BSA9 504 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 NIFKQ9BYG3 293 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 GOLPH3LQ9H4A5 285 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 PLEKHA4Q9H4M7 779 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 RGL1Q9NZL6 768 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 RAB23Q9ULC3 237 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 PCDHA12Q9UN75 941 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 MYH9P35579 1960 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 IGF2RP11717 2491 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 CAVIN2O95810 425 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 P4HBP07237 508 aaKnown RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 MCM7P33993 719 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 GLUD2P49448 558 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 NPEPPSP55786 919 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 DSG1Q02413 1049 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 TYRO3Q06418 890 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 SRSF5Q13243 272 aaKnown RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 PTPAQ15257 358 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 TARBP2Q15633 366 aaKnown RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 ZNF174Q15697 407 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 HS1BP3Q53T59 392 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 RILPL1Q5EBL4 403 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 PLA2G4FQ68DD2 849 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 ANO5Q75V66 913 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 GLYCTKQ8IVS8 523 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 FMR1NBQ8N0W7 255 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 ZNF710Q8N1W2 664 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 KDF1Q8NAX2 398 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 ITFG1Q8TB96 612 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 FGF13Q92913 245 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 TRIM44Q96DX7 344 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 DYDC2Q96IM9 177 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 SCLT1Q96NL6 688 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 NELL2Q99435 816 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 KXD1Q9BQD3 176 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 TMEM121BQ9BXQ6 578 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 CHST7Q9NS84 486 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 RXFP3Q9NSD7 469 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 PRG3Q9Y2Y8 225 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 MORC2Q9Y6X9 1032 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-230ENST00000557427 RALGAPA1Q6GYQ0 2036 aa13.79□□□□□ -0.2
SHMT2-230ENST00000557427 A0A087WWV3 80 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 A0A087WZ62 844 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 FAM237AA0A1B0GTK4 181 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 ZBTB39O15060 712 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 ZMYND10O75800 440 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 POMCP01189 267 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 SKIP12755 728 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 RPL17P18621 184 aaKnown RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 CMA1P23946 247 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 DNM2P50570 870 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 PFKPQ01813 784 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 CYP4A11Q02928 519 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 ADCY1Q08828 1119 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 CAMK4Q16566 473 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 AXDND1Q5T1B0 1012 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 ELMSAN1Q6PJG2 1045 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 POTEHQ6S545 545 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 SASS6Q6UVJ0 657 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 UNQ6494/PRO21346Q6UXR6 183 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 MAMSTRQ6ZN01 415 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 COLGALT2Q8IYK4 626 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 FDXACB1Q9BRP7 624 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 PLA2G2FQ9BZM2 168 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 TTC12Q9H892 705 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 HEBP1Q9NRV9 189 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 SUCLA2Q9P2R7 463 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 WRAP73Q9P2S5 460 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 PIN4Q9Y237 131 aaKnown RBP13.78□□□□□ -0.2
SHMT2-230ENST00000557427 SSX2IPQ9Y2D8 614 aa13.78□□□□□ -0.2
SHMT2-230ENST00000557427 SOBPA7XYQ1 873 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 NCAM2O15394 837 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 NEMFO60524 1076 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 DKC1O60832 514 aaKnown RBP eCLIP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 CUTAO60888 179 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 MAFO75444 373 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 SLITRK3O94933 977 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 C1RP00736 705 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 NRLP54845 237 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 SIM2Q14190 667 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 IL31Q6EBC2 164 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 ZNF852Q6ZMS4 543 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 MTSS1LQ765P7 747 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 MRPL10Q7Z7H8 261 aaKnown RBP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 KSR1Q8IVT5 923 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 FAM200AQ8TCP9 573 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 CEP170P1Q96L14 293 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 CEP89Q96ST8 783 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 EIF2AK1Q9BQI3 630 aaKnown RBP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 LXNQ9BS40 222 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 GCOM2Q9BZD3 368 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-230ENST00000557427 TMEM60Q9H2L4 133 aa13.77□□□□□ -0.21
SHMT2-230ENST00000557427 CHRDQ9H2X0 955 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms