RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 ACAP3Q96P50 834 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 PPP1R10Q96QC0 940 aaKnown RBP12.61□□□□□ -0.39
SLIRP-205ENST00000556310 CXCL16Q9H2A7 254 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 MAGEF1Q9HAY2 307 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 OLFML3Q9NRN5 406 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 KBTBD4Q9NVX7 518 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 FAM13BQ9NYF5 915 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 CLEC1BQ9P126 229 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 CD207Q9UJ71 328 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 ADAM28Q9UKQ2 775 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 BARX2Q9UMQ3 279 aaPredicted RBP12.61□□□□□ -0.39
SLIRP-205ENST00000556310 ANK1P16157 1881 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 PLXNA3P51805 1871 aa12.61□□□□□ -0.39
SLIRP-205ENST00000556310 SF3B1O75533 1304 aaKnown RBP eCLIP12.61□□□□□ -0.39
SLIRP-205ENST00000556310 C5orf42Q9H799 3197 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 KIF4AO95239 1232 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 CXCL14O95715 111 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 IDEP14735 1019 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 KCNE1P15382 129 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 MATR3P43243 847 aaKnown RBP eCLIP12.6□□□□□ -0.39
SLIRP-205ENST00000556310 GLUD2P49448 558 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 COASYQ13057 564 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 CLUL1Q15846 466 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 ALKAL1Q6UXT8 129 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 ZNF720Q7Z2F6 126 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 SMRP1Q8NCR6 262 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 LEO1Q8WVC0 666 aaPredicted RBP12.6□□□□□ -0.39
SLIRP-205ENST00000556310 DHX58Q96C10 678 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 UROC1Q96N76 676 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 PAAF1Q9BRP4 392 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 PYM1Q9BRP8 204 aaKnown RBP12.6□□□□□ -0.39
SLIRP-205ENST00000556310 LRRC27Q9C0I9 530 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 HAPLN2Q9GZV7 340 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 MRPL17Q9NRX2 175 aaKnown RBP12.6□□□□□ -0.39
SLIRP-205ENST00000556310 CNTN3Q9P232 1028 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 CACNG4Q9UBN1 327 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 SSX2IPQ9Y2D8 614 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 HCFC2Q9Y5Z7 792 aa12.6□□□□□ -0.39
SLIRP-205ENST00000556310 SMIM28A0A1B0GU29 152 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 TMEM189-UBE2V1I3L0A0 370 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 OGTO15294 1046 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 POLR2DO15514 142 aaKnown RBP12.59□□□□□ -0.39
SLIRP-205ENST00000556310 MBTPS2O43462 519 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 LILRB3O75022 631 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 CLASP2O75122 1294 aaKnown RBP12.59□□□□□ -0.39
SLIRP-205ENST00000556310 NUDT7P0C024 238 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 IL9P15248 144 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 RBM10P98175 930 aaKnown RBP12.59□□□□□ -0.39
SLIRP-205ENST00000556310 AMPD3Q01432 767 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 ALCAMQ13740 583 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 KYAT1Q16773 422 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 ZC2HC1CQ53FD0 456 aaPredicted RBP12.59□□□□□ -0.39
SLIRP-205ENST00000556310 SLC39A4Q6P5W5 647 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 CCDC65Q8IXS2 484 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 GPR65Q8IYL9 337 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 TMEM87AQ8NBN3 555 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 CASP10Q92851 521 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 SPATA32Q96LK8 384 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 NECAB3Q96P71 396 aaPredicted RBP12.59□□□□□ -0.39
SLIRP-205ENST00000556310 STRA6Q9BX79 667 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 EMILIN2Q9BXX0 1053 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 TRIM9Q9C026 710 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 MRPL44Q9H9J2 332 aaKnown RBP12.59□□□□□ -0.39
SLIRP-205ENST00000556310 SLC38A7Q9NVC3 462 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 PANK4Q9NVE7 773 aa12.59□□□□□ -0.39
SLIRP-205ENST00000556310 A0A0B4J269 797 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 MEFVO15553 781 aaPredicted RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 FAM189A1O60320 539 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 TADA2AO75478 443 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 CLTAP09496 248 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 CXCL8P10145 99 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 HOXB8P17481 243 aaPredicted RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 DSG1Q02413 1049 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 ELAVL2Q12926 359 aaKnown RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 SMAD2Q15796 467 aaKnown RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 SLC10A6Q3KNW5 377 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 USP41Q3LFD5 358 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 SEZ6Q53EL9 994 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 HERC4Q5GLZ8 1057 aaPredicted RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 KIAA0319Q5VV43 1072 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 ANKRD54Q6NXT1 300 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 LLGL2Q6P1M3 1020 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 CNNM4Q6P4Q7 775 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 TAS1R1Q7RTX1 841 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 PPFIBP1Q86W92 1011 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 HASPINQ8TF76 798 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 RABGGTAQ92696 567 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 STAMQ92783 540 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 CHAMP1Q96JM3 812 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 ZMAT2Q96NC0 199 aaKnown RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 MSTO1Q9BUK6 570 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 GPR62Q9BZJ7 368 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 SCAND2PQ9GZW5 306 aaPredicted RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 PLEKHA5Q9HAU0 1116 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 CHST7Q9NS84 486 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 DZANK1Q9NVP4 752 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 PRKAG3Q9UGI9 489 aa12.58□□□□□ -0.4
SLIRP-205ENST00000556310 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.58□□□□□ -0.4
SLIRP-205ENST00000556310 DENND4AQ7Z401 1863 aa12.57□□□□□ -0.4
SLIRP-205ENST00000556310 MTCL1Q9Y4B5 1905 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms