RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ITIH3Q06033 890 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 SPIRE1Q08AE8 756 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 MAPK7Q13164 816 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 PPP2R5CQ13362 524 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 SETDB1Q15047 1291 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 ZNF568Q3ZCX4 644 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 ZNF449Q6P9G9 518 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 PAF1Q8N7H5 531 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 MCEEQ96PE7 176 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 TEX13BQ9BXU2 312 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 HEY1Q9Y5J3 304 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 IVNS1ABPQ9Y6Y0 642 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 PKD1L3Q7Z443 1732 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 CASZ1Q86V15 1759 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 IGLV3-22A0A075B6J6 115 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 BRD2P25440 801 aaKnown RBP15.8■□□□□ 0.12
CUX1-215ENST00000556210 PSMA2P25787 234 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 ELF1P32519 619 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 CIITAP33076 1130 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 ATP11AP98196 1134 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 EMC2Q15006 297 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 ZSWIM1Q9BR11 485 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 CARD9Q9H257 536 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 SLC24A3Q9HC58 644 aa15.8■□□□□ 0.12
CUX1-215ENST00000556210 SHOX2O60902 331 aaPredicted RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 RNF8O76064 485 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 ZNF844Q08AG5 666 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 ALCAMQ13740 583 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 SPDYE2Q495Y8 402 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 OR6B2Q6IFH4 312 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 TRAPPC12Q8WVT3 735 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 DDX23Q9BUQ8 820 aaKnown RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 CNOT10Q9H9A5 744 aaKnown RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 MRPL47Q9HD33 250 aaKnown RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 PCDHA2Q9Y5H9 948 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 SIPA1L3O60292 1781 aaPredicted RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 PHF2O75151 1096 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 DGAT1O75907 488 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 STAT5BP51692 787 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 MYO1EQ12965 1108 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 NCOA4Q13772 614 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 CCDC6Q16204 474 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 ATP13A4Q4VNC1 1196 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 IZUMO3Q5VZ72 239 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 SLC13A5Q86YT5 568 aaPredicted RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 C4orf33Q8N1A6 199 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 RBBP8NLQ8NC74 664 aaPredicted RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 ACTRT1Q8TDG2 376 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 GRK7Q8WTQ7 553 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 CHMP6Q96FZ7 201 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 SH3GL2Q99962 352 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 PSMC4P43686 418 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 IFRD2Q12894 506 aaPredicted RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 SLMAPQ14BN4 828 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 FAM149B1Q96BN6 582 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 DCPSQ96C86 337 aaKnown RBP15.79■□□□□ 0.12
CUX1-215ENST00000556210 WNK4Q96J92 1243 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 CDHR1Q96JP9 859 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 RUNDC3BQ96NL0 473 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 WNT8AQ9H1J5 351 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 ELP3Q9H9T3 547 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 FRMPD4Q14CM0 1322 aa15.79■□□□□ 0.12
CUX1-215ENST00000556210 OPLAHO14841 1288 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 CYP3A4P08684 503 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 ATP5DP30049 168 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 KRT81Q14533 505 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 R3HDM1Q15032 1099 aaKnown RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 MAPK6Q16659 721 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 ASTE1Q2TB18 679 aaPredicted RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 ZNF699Q32M78 642 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 C6orf118Q5T5N4 469 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 ZBED8Q8IZ13 594 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 KCTD6Q8NC69 237 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 LPAR1Q92633 364 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 SEMA4DQ92854 862 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 KLHL29Q96CT2 875 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 TMEM8AQ9HCN3 771 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 PXMP2Q9NR77 195 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 LAMB4A4D0S4 1761 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 TCP11X1B4DZS4 312 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 GTF2H1P32780 548 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 RPL21P46778 160 aaKnown RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 NOP14P78316 857 aaKnown RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 CYB5D1Q6P9G0 228 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 KIRREL3Q8IZU9 778 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 GINM1Q9NU53 330 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 KLHL14Q9P2G3 628 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 CPP00450 1065 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 ITGA8P53708 1063 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 SESN3P58005 492 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 NLRP11P59045 1033 aaKnown RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 MRPS9P82933 396 aaKnown RBP15.78■□□□□ 0.12
CUX1-215ENST00000556210 DOT1LQ8TEK3 1739 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 PARD3BQ8TEW8 1205 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 RAPGEF5Q92565 580 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 ZBTB10Q96DT7 871 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 TMBIM4Q9HC24 238 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 GDF3Q9NR23 364 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 CYP26B1Q9NR63 512 aa15.78■□□□□ 0.12
CUX1-215ENST00000556210 SEPT10Q9P0V9 454 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms