RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 POU5F1Q01860 360 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 CEBPZQ03701 1054 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 DHX8Q14562 1220 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 SLC10A6Q3KNW5 377 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 GLRA4Q5JXX5 417 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 ATAT1Q5SQI0 421 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 RARS2Q5T160 578 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 CD300LGQ6UXG3 332 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 ZBTB33Q86T24 672 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 RIN2Q8WYP3 895 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 DNAJC19Q96DA6 116 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 ZMAT2Q96NC0 199 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 STRA6Q9BX79 667 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 HAPLN2Q9GZV7 340 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 MAN1C1Q9NR34 630 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 OLFML3Q9NRN5 406 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 ZDHHC7Q9NXF8 308 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 TRIP11Q15643 1979 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 A0A0B4J269 797 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 TTC26A0AVF1 554 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 PRR33A8MZF0 331 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 SPTLC2O15270 562 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 B3GAT3O94766 335 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 F13A1P00488 732 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 HSP90AA1P07900 732 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 LIG4P49917 911 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 CLCNKBP51801 687 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 SOX4Q06945 474 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 STK38Q15208 465 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 FAM171A1Q5VUB5 890 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 SV2BQ7L1I2 683 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 RTL10Q7L3V2 364 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 LNX1Q8TBB1 728 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 RABGGTAQ92696 567 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 DDX12PQ92771 950 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 LRFN3Q9BTN0 628 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 CUEDC2Q9H467 287 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 MUTYHQ9UIF7 546 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 STYXL1Q9Y6J8 313 aa17.52■□□□□ 0.4
CCDC88C-209ENST00000554872 VWA8A3KMH1 1905 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 MYMKA6NI61 221 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 OGTO15294 1046 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 OSTNP61366 133 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 ZBTB6Q15916 424 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 ZNF720Q7Z2F6 126 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 ZDHHC14Q8IZN3 488 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 C12orf76Q8N812 135 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 C3orf58Q8NDZ4 430 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 KCNG4Q8TDN1 519 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 HASPINQ8TF76 798 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 BICD1Q96G01 975 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 RPGRIP1Q96KN7 1286 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 B3GALT6Q96L58 329 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 APOL5Q9BWW9 433 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 MTRRQ9UBK8 725 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 ARIH1Q9Y4X5 557 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 BACE2Q9Y5Z0 518 aa17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 MTCL1Q9Y4B5 1905 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-209ENST00000554872 A0A087X0B3 334 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 SYN3O14994 580 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 TGM5O43548 720 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 CUTAO60888 179 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 POU2F2P09086 479 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 CYP3A5P20815 502 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 LRPAP1P30533 357 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 HOXA9P31269 272 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 STAT6P42226 847 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 ALCAMQ13740 583 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 E2F4Q16254 413 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 PSMD5Q16401 504 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 CNNM4Q6P4Q7 775 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 SLC39A4Q6P5W5 647 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 TMC5Q6UXY8 1006 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 ANKS3Q6ZW76 656 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 CD302Q8IX05 232 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 EDAQ92838 391 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 CLSTN3Q9BQT9 956 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 TNMDQ9H2S6 317 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 GOLGA2P5Q9HBQ8 144 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 CDH22Q9UJ99 828 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 FBXW11Q9UKB1 542 aa17.5■□□□□ 0.39
CCDC88C-209ENST00000554872 PODXLO00592 558 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 CXCL8P10145 99 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 HARSP12081 509 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 NMT1P30419 496 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 RAB33AQ14088 237 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 PTPN21Q16825 1174 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 SLFN12LQ6IEE8 588 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 PRSS55Q6UWB4 352 aaPredicted RBP17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 CCDC149Q6ZUS6 474 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 SFR1Q86XK3 245 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 PLCD3Q8N3E9 789 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 LRRC27Q9C0I9 530 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 KBTBD4Q9NVX7 518 aa17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 CPSF3Q9UKF6 684 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-209ENST00000554872 C2orf16Q68DN1 1984 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 C2CD4DB7Z1M9 353 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 PAX3P23760 479 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 PPP2R3AQ06190 1150 aa17.48■□□□□ 0.39
CCDC88C-209ENST00000554872 ENOX2Q16206 610 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms