RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SMRP1Q8NCR6 262 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 TRIM9Q9C026 710 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 S1PR5Q9H228 398 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 ST6GALNAC4Q9H4F1 302 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 MRPL17Q9NRX2 175 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 CHST7Q9NS84 486 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 TUBGCP4Q9UGJ1 667 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 SERTAD1Q9UHV2 236 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 KCNH3Q9ULD8 1083 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 USP15Q9Y4E8 981 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 IRAK3Q9Y616 596 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 CITO14578 2027 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 TTC26A0AVF1 554 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 LACTBL1A8MY62 500 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 OGTO15294 1046 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 TEX28O15482 410 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 B3GAT3O94766 335 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 PRPF6O94906 941 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 GCNT3O95395 438 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 CLTAP09496 248 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 SPATA31D3P0C874 917 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 KCNE1P15382 129 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 PFKFB1P16118 471 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 GAP43P17677 238 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 KLRC2P26717 231 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 BRCC3P46736 316 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 ACOT2P49753 483 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 ASIC1P78348 528 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 KRT85P78386 507 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 DSG1Q02413 1049 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 SMAD4Q13485 552 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 RTP2Q5QGT7 225 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM171A1Q5VUB5 890 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 TMEM184AQ6ZMB5 413 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 SPATA31D4Q6ZUB0 917 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 CEP57Q86XR8 500 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 RIN2Q8WYP3 895 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM212AQ96EL1 285 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 MSTO1Q9BUK6 570 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 TNMDQ9H2S6 317 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 TOPORSQ9NS56 1045 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM13BQ9NYF5 915 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 CNTN3Q9P232 1028 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 SEL1LQ9UBV2 794 aa12.64□□□□□ -0.39
CCDC88C-208ENST00000554165 CARNS1A5YM72 827 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 ADAM12O43184 909 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 ACTN4O43707 911 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 URODP06132 367 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 HOXD13P35453 343 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 WNT7BP56706 349 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 CUL4BQ13620 913 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 BMS1Q14692 1282 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 SMAD2Q15796 467 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 UPP1Q16831 310 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 L1TD1Q5T7N2 865 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 KIAA1841Q6NSI8 718 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 PALB2Q86YC2 1186 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 TMEM87AQ8NBN3 555 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM84AQ96KN4 292 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 C7orf25Q9BPX7 421 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 CUEDC2Q9H467 287 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 GOLPH3LQ9H4A5 285 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 OLFML3Q9NRN5 406 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 CPSF3Q9UKF6 684 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 STYXL1Q9Y6J8 313 aa12.63□□□□□ -0.39
CCDC88C-208ENST00000554165 SF3B1O75533 1304 aaKnown RBP eCLIP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 VWA8A3KMH1 1905 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 TNFRSF10AO00220 468 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 PODXLO00592 558 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 PPEF2O14830 753 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 CMA1P23946 247 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 CLCN4P51793 760 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 NDUFA8P51970 172 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 ZP2Q05996 745 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 ZBTB6Q15916 424 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 USP41Q3LFD5 358 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 PUS10Q3MIT2 529 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 RARS2Q5T160 578 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 SCARA3Q6AZY7 606 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 ADALQ6DHV7 355 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 DCLRE1AQ6PJP8 1040 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 CRELD2Q6UXH1 353 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 RSPO2Q6UXX9 243 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 CCDC65Q8IXS2 484 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 SAAL1Q96ER3 474 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 KIF12Q96FN5 646 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 PAGE5Q96GU1 130 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 ACCSQ96QU6 501 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 CLSTN3Q9BQT9 956 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 TTPALQ9BTX7 342 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 EMILIN2Q9BXX0 1053 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 RPF1Q9H9Y2 349 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 RXFP1Q9HBX9 757 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 AGO2Q9UKV8 859 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 HPSEQ9Y251 543 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 MUC3AQ02505 3323 aa12.62□□□□□ -0.39
CCDC88C-208ENST00000554165 GOLGA8IPA6NC78 632 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 GOLGA8JA6NMD2 632 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 TMEM189-UBE2V1I3L0A0 370 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 TULP1O00294 542 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms