RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 IVDP26440 423 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 GJC1P36383 396 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 GPC3P51654 580 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CDR1P51861 262 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 ITGA8P53708 1063 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CALCOCO2Q13137 446 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 MPP2Q14168 576 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 SLMAPQ14BN4 828 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CLUL1Q15846 466 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CLEC16AQ2KHT3 1053 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 ARMC9Q7Z3E5 817 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 PASD1Q8IV76 773 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 MAP4K3Q8IVH8 894 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 ANKRD42Q8N9B4 389 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 C12orf50Q8NA57 414 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-213ENST00000552720 GMLQ99445 158 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 FAM213AQ9BRX8 229 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 ST6GALNAC4Q9H4F1 302 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 KMT5AQ9NQR1 393 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 PARP2Q9UGN5 583 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 TBK1Q9UHD2 729 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 COQ4Q9Y3A0 265 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 RIPK3Q9Y572 518 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 PTPRJQ12913 1337 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM120BA0PK00 339 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 FSCN2O14926 492 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 HGSO14964 777 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-213ENST00000552720 ZNF862O60290 1169 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 UNGP13051 313 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-213ENST00000552720 PSMC5P62195 406 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CYP24A1Q07973 514 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 E2F5Q15329 346 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 RHBDF2Q6PJF5 856 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 VSTM1Q6UX27 236 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CYFIP1Q7L576 1253 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 TAX1BP1Q86VP1 789 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 PARP9Q8IXQ6 854 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 DHX37Q8IY37 1157 aaKnown RBP8.01□□□□□ -1.13
LIMA1-213ENST00000552720 C4orf19Q8IY42 314 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 GDAP1Q8TB36 358 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 MORC4Q8TE76 937 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM174Q8WUU8 243 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 ARHGEF2Q92974 986 aaKnown RBP8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CNKSR1Q969H4 720 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 SCLT1Q96NL6 688 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 RMDN3Q96TC7 470 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 DEFB129Q9H1M3 183 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 KDM4CQ9H3R0 1056 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 FGFR1OP2Q9NVK5 253 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 KLHL11Q9NVR0 708 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 UVRAGQ9P2Y5 699 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 AGAP1Q9UPQ3 857 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 SSUH2Q9Y2M2 353 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 MGAMO43451 1857 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 MYPNQ86TC9 1320 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 TCP11X1B4DZS4 312 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 HNRNPDLO14979 420 aaKnown RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 MAPK13O15264 365 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 ASAP2O43150 1006 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 LYPLA2O95372 231 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 TAS2R40P59535 323 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 DMP1Q13316 513 aaPredicted RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 XRCC4Q13426 336 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 ZKSCAN8Q15776 578 aaPredicted RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 HIBCHQ6NVY1 386 aaPredicted RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 TAS1R3Q7RTX0 852 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 CCDC50Q8IVM0 306 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 MCOLN2Q8IZK6 566 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 OGFOD1Q8N543 542 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 GPATCH11Q8N954 259 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 DYDC1Q8WWB3 177 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 VTI1AQ96AJ9 217 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 SGSM3Q96HU1 749 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 CEP170P1Q96L14 293 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 C9orf72Q96LT7 481 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 MFSD14AQ96MC6 490 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 PDCD2LQ9BRP1 358 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM109Q9BVC6 243 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 TAOK3Q9H2K8 898 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 GABBR1Q9UBS5 961 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 PGAP2Q9UHJ9 254 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 TCEAL9Q9UHQ7 104 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 UMODL1Q5DID0 1318 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 WDR64B1ANS9 1081 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 CHUKO15111 745 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 PMM2O15305 246 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 EGFRP00533 1210 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 ASNSP08243 561 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 RALAP11233 206 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 MKRN3Q13064 507 aaKnown RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 SNCBQ16143 134 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 NIPA1Q7RTP0 329 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 CEP57Q86XR8 500 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 LARGE2Q8N3Y3 721 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 DDX27Q96GQ7 796 aaKnown RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 FBXL18Q96ME1 805 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 C11orf70Q9BRQ4 267 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 DCLK3Q9C098 648 aa8□□□□□ -1.13
LIMA1-213ENST00000552720 PDGFDQ9GZP0 370 aaPredicted RBP8□□□□□ -1.13
LIMA1-213ENST00000552720 SLC38A10Q9HBR0 1119 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms