RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 SF1Q15637 639 aaKnown RBP2.98□□□□□ -1.93
PTCH1-223ENST00000551623 TMEM31Q5JXX7 168 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 SPTY2D1Q68D10 685 aaPredicted RBP2.98□□□□□ -1.93
PTCH1-223ENST00000551623 DENND5AQ6IQ26 1287 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 C15orf52Q6ZUT6 534 aaKnown RBP2.98□□□□□ -1.93
PTCH1-223ENST00000551623 MORC1Q86VD1 984 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 ZNF654Q8IZM8 581 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 RCBTB1Q8NDN9 531 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 PNISRQ8TF01 805 aaKnown RBP2.98□□□□□ -1.93
PTCH1-223ENST00000551623 CLEC4DQ8WXI8 215 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 CHAMP1Q96JM3 812 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 PHACTR3Q96KR7 559 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 ISCA1Q9BUE6 129 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 NKX2-4Q9H2Z4 354 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 NELFAQ9H3P2 528 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 CLDND1Q9NY35 253 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 TRMT112Q9UI30 125 aaKnown RBP2.98□□□□□ -1.93
PTCH1-223ENST00000551623 SLC45A1Q9Y2W3 748 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 LTBP2Q14767 1821 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 ECM29Q5VYK3 1845 aa2.98□□□□□ -1.93
PTCH1-223ENST00000551623 DDX60LQ5H9U9 1706 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 ARAP2Q8WZ64 1704 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 CHD8Q9HCK8 2581 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 ESYT3A0FGR9 886 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 ANKRD34BA5PLL1 514 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 ZNF839A8K0R7 811 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PDHXO00330 501 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 KRIT1O00522 736 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 SCAMP3O14828 347 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 SLC27A2O14975 620 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 MEFVO15553 781 aaPredicted RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 LCP1P13796 627 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 HSP90B1P14625 803 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PDE6AP16499 860 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 POU3F3P20264 500 aaPredicted RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 ETV4P43268 484 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 MFAP1P55081 439 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 NHLH1Q02575 133 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PPATQ06203 517 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 COL9A2Q14055 689 aaPredicted RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 RASA3Q14644 834 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 DLGAP5Q15398 846 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PPP2R5EQ16537 467 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 LRRC26Q2I0M4 334 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PRSS53Q2L4Q9 553 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PAN2Q504Q3 1202 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 FKBP1CQ5VVH2 108 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 CD276Q5ZPR3 534 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 MRM1Q6IN84 353 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 VHLLQ6RSH7 139 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 NT5DC4Q86YG4 428 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 VRK3Q8IV63 474 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 TRIM59Q8IWR1 403 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 GPR135Q8IZ08 494 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 CERS5Q8N5B7 392 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 KREMEN2Q8NCW0 462 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 BVESQ8NE79 360 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 MICAL1Q8TDZ2 1067 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 BTN2A2Q8WVV5 523 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 HAS1Q92839 578 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 PARK7Q99497 189 aaKnown RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 ACBD3Q9H3P7 528 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 GABRQQ9UN88 632 aa2.97□□□□□ -1.93
PTCH1-223ENST00000551623 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.97□□□□□ -1.93
PTCH1-223ENST00000551623 AOX1Q06278 1338 aa2.96□□□□□ -1.93
PTCH1-223ENST00000551623 PI4K2BG5E9Z4 385 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 NOP56O00567 594 aaKnown RBP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 U2AF1L5P0DN76 240 aaPredicted RBP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 IL1R1P14778 569 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 U2AF1Q01081 240 aaKnown RBP eCLIP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 SHHQ15465 462 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 FAM110CQ1W6H9 321 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 AAK1Q2M2I8 961 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 C9orf50Q5SZB4 431 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 TTLL5Q6EMB2 1281 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 USP30Q70CQ3 517 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 ZBTB38Q8NAP3 1195 aaPredicted RBP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 HOOK2Q96ED9 719 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 C1orf159Q96HA4 380 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 TMEM176AQ96HP8 235 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 PRMT6Q96LA8 375 aaPredicted RBP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 LBHD1Q9BQE6 289 aaPredicted RBP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 MXD3Q9BW11 206 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 KRTAP1-5Q9BYS1 174 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 KIAA1683Q9H0B3 1180 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 EPHX3Q9H6B9 360 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 PANK3Q9H999 370 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 SLC6A20Q9NP91 592 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 BABAM1Q9NWV8 329 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 CPA4Q9UI42 421 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 ZNF112Q9UJU3 913 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 GJD2Q9UKL4 321 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 RRP7AQ9Y3A4 280 aaKnown RBP2.96□□□□□ -1.94
PTCH1-223ENST00000551623 PCDHA2Q9Y5H9 948 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 ZDBF2Q9HCK1 2354 aa2.96□□□□□ -1.94
PTCH1-223ENST00000551623 CXCL11O14625 94 aa2.95□□□□□ -1.94
PTCH1-223ENST00000551623 TNPO2O14787 897 aaKnown RBP2.95□□□□□ -1.94
PTCH1-223ENST00000551623 ERC2O15083 957 aa2.95□□□□□ -1.94
PTCH1-223ENST00000551623 MYL6BP14649 208 aa2.95□□□□□ -1.94
PTCH1-223ENST00000551623 PRKAR2BP31323 418 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms