RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RNASELQ05823 741 aaKnown RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 LONRF1Q17RB8 773 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 HIBCHQ6NVY1 386 aaPredicted RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 C1orf131Q8NDD1 294 aaKnown RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 TIPINQ9BVW5 301 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 KIAA1683Q9H0B3 1180 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 PARVAQ9NVD7 372 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 IP6K2Q9UHH9 426 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 MAFGO15525 162 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 SPAG7O75391 227 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 RRM1P23921 792 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 SDC4P31431 198 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 CYP2C19P33261 490 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 PDIA2Q13087 525 aaKnown RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 GLRA4Q5JXX5 417 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 UBA3Q8TBC4 463 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 PPP1R13LQ8WUF5 828 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 SLC5A5Q92911 643 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 C18orf8Q96DM3 657 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 COL1A1P02452 1464 aaPredicted RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 FAM187AA6NFU0 413 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 PEX10O60683 326 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 SLC12A2P55011 1212 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 RCN2Q14257 317 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 MEA1Q16626 185 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 LY6KQ17RY6 165 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 ARSHQ5FYA8 562 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 ATF7IP2Q5U623 682 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 ZNF449Q6P9G9 518 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 FASTKD5Q7L8L6 764 aaKnown RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 DHX35Q9H5Z1 703 aaKnown RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 BCAS3Q9H6U6 928 aa15.92■□□□□ 0.14
CUX1-214ENST00000550008 REXO2Q9Y3B8 237 aaKnown RBP15.92■□□□□ 0.14
CUX1-214ENST00000550008 CREB3O43889 395 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 SLC4A1P02730 911 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 CYP11B1P15538 503 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 KYNUQ16719 465 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 C1orf186Q6ZWK4 172 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 SPIRE2Q8WWL2 714 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 CYFIP2Q96F07 1278 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 UVRAGQ9P2Y5 699 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 PIN4Q9Y237 131 aaKnown RBP15.91■□□□□ 0.14
CUX1-214ENST00000550008 SSX2IPQ9Y2D8 614 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 EXTL3O43909 919 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 CYP2B6P20813 491 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 CDK17Q00537 523 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 SDCCAG8Q86SQ7 713 aaPredicted RBP15.91■□□□□ 0.14
CUX1-214ENST00000550008 DCLK2Q8N568 766 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 RGPD5Q99666 1765 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 ADM5C9JUS6 153 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 GOLGA8RI6L899 631 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 SLC26A4O43511 780 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 PSMD10O75832 226 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 GUCY2CP25092 1073 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 RSPH3Q86UC2 560 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 TTC17Q96AE7 1141 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 OSBPL8Q9BZF1 889 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 PPP1R12CQ9BZL4 782 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 SMARCAD1Q9H4L7 1026 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 ALG13Q9NP73 1137 aaKnown RBP15.91■□□□□ 0.14
CUX1-214ENST00000550008 A1CFQ9NQ94 594 aaKnown RBP15.91■□□□□ 0.14
CUX1-214ENST00000550008 SUPT20HL2P0C7V6 817 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 RALAP11233 206 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 NLRP11P59045 1033 aaKnown RBP15.91■□□□□ 0.14
CUX1-214ENST00000550008 AMHR2Q16671 573 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 OR6J1Q8NGC5 347 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 ETNPPLQ8TBG4 499 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 KLHL29Q96CT2 875 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 ACAP3Q96P50 834 aa15.91■□□□□ 0.14
CUX1-214ENST00000550008 CNOT10Q9H9A5 744 aaKnown RBP15.91■□□□□ 0.14
CUX1-214ENST00000550008 ANKRD63C9JTQ0 380 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 HUS1O60921 280 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 LCP1P13796 627 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 PCK1P35558 622 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 C4orf19Q8IY42 314 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 SCYL1Q96KG9 808 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.9■□□□□ 0.149e-8■■■■■ 27.8
CUX1-214ENST00000550008 RGPD1P0DJD0 1748 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 ASB14A6NK59 587 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 TRIM66O15016 1216 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 PPP3CAQ08209 521 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 DHX34Q14147 1143 aaKnown RBP15.9■□□□□ 0.14
CUX1-214ENST00000550008 MXD4Q14582 209 aaPredicted RBP15.9■□□□□ 0.14
CUX1-214ENST00000550008 TBC1D1Q86TI0 1168 aaPredicted RBP15.9■□□□□ 0.14
CUX1-214ENST00000550008 HNRNPLLQ8WVV9 542 aaKnown RBP15.9■□□□□ 0.14
CUX1-214ENST00000550008 ERP44Q9BS26 406 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 STRIP2Q9ULQ0 834 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 G3BP2Q9UN86 482 aaKnown RBP15.9■□□□□ 0.14
CUX1-214ENST00000550008 PHF2O75151 1096 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 KRT10P13645 584 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 PDGFRAP16234 1089 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 BCAR1P56945 870 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 TNFAIP2Q03169 654 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 NME3Q13232 169 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 PPP1R2P3Q6NXS1 205 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 ANKRD13AQ8IZ07 590 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 ABI1Q8IZP0 508 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 NSMCE1Q8WV22 266 aa15.9■□□□□ 0.14
CUX1-214ENST00000550008 EFCC1Q9HA90 598 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms