RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 MYO10Q9HD67 2058 aa20.4■□□□□ 0.86
CHMP1A-207ENST00000549328 CNTN3Q9P232 1028 aa20.4■□□□□ 0.86
CHMP1A-207ENST00000549328 SORCS3Q9UPU3 1222 aa20.4■□□□□ 0.86
CHMP1A-207ENST00000549328 MTCL1Q9Y4B5 1905 aaKnown RBP20.4■□□□□ 0.86
CHMP1A-207ENST00000549328 RFPL2O75678 378 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 FAM13AO94988 1023 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 SPATA31D3P0C874 917 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 ABCD1P33897 745 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 PLA2G5P39877 138 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 CD300LGQ6UXG3 332 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 SPATA31D4Q6ZUB0 917 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 GLYCTKQ8IVS8 523 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 UBALD2Q8IYN6 164 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 MYCT1Q8N699 235 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 KREMEN2Q8NCW0 462 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 PBXIP1Q96AQ6 731 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 EPSTI1Q96J88 318 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 ZMAT2Q96NC0 199 aaKnown RBP20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 WDR6Q9NNW5 1121 aaKnown RBP20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 ANKFY1Q9P2R3 1169 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 LIMD1Q9UGP4 676 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 FBXO2Q9UK22 296 aaPredicted RBP20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 MTMR6Q9Y217 621 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 DENND4AQ7Z401 1863 aa20.39■□□□□ 0.85
CHMP1A-207ENST00000549328 KRT18P05783 430 aaKnown RBP20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 MARCKSP29966 332 aaPredicted RBP20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 RPL9P32969 192 aaKnown RBP20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 SOX4Q06945 474 aaPredicted RBP20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 MTMR3Q13615 1198 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 SLC10A6Q3KNW5 377 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 SMG7Q92540 1137 aaKnown RBP20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 STAMQ92783 540 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 SNX21Q969T3 373 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 ZNF707Q96C28 371 aaPredicted RBP20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 FAM122AQ96E09 287 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 ASIC4Q96FT7 647 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 PRKD2Q9BZL6 878 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 PLEKHA5Q9HAU0 1116 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 GOLGA2P5Q9HBQ8 144 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 STK17AQ9UEE5 414 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 CCDC39Q9UFE4 941 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 TBX20Q9UMR3 447 aa20.38■□□□□ 0.85
CHMP1A-207ENST00000549328 CITO14578 2027 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 C2orf16Q68DN1 1984 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 STX6O43752 255 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 TRAK2O60296 914 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 ZMYND10O75800 440 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 PIGRP01833 764 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 CLTAP09496 248 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 HARSP12081 509 aaKnown RBP20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 IGFBP6P24592 240 aaPredicted RBP20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 SLC39A14Q15043 492 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 KYAT1Q16773 422 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 FAM173BQ6P4H8 233 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 USP49Q70CQ1 688 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 C3orf58Q8NDZ4 430 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 BICD1Q96G01 975 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 MTRRQ9UBK8 725 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 FBXW11Q9UKB1 542 aa20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.37■□□□□ 0.85
CHMP1A-207ENST00000549328 MEFVO15553 781 aaPredicted RBP20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 TBCAO75347 108 aaKnown RBP20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 MYBP10242 640 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 TXLNAP40222 546 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 LIG4P49917 911 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 RAB33AQ14088 237 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 SPECC1Q5M775 1068 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 ANKS3Q6ZW76 656 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 FBXL6Q8N531 539 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 KRI1Q8N9T8 703 aaKnown RBP20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 PIDD1Q9HB75 910 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 BACE2Q9Y5Z0 518 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 ZNF318Q5VUA4 2279 aa20.36■□□□□ 0.85
CHMP1A-207ENST00000549328 VWA8A3KMH1 1905 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 CLUHO75153 1309 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 K7ENM7 598 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 PODXLO00592 558 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 HNRNPDLO14979 420 aaKnown RBP20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 ASGR2P07307 311 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 HNRNPA1P09651 372 aaKnown RBP eCLIP20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 MATR3P43243 847 aaKnown RBP eCLIP20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 GTF2BQ00403 316 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 CEBPZQ03701 1054 aaKnown RBP20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 UVSSAQ2YD98 709 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 SEZ6Q53EL9 994 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 RTL10Q7L3V2 364 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 USP28Q96RU2 1077 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 FIZ1Q96SL8 496 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 HAPLN2Q9GZV7 340 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 ST6GALNAC4Q9H4F1 302 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 FOXD4L1Q9NU39 408 aa20.35■□□□□ 0.85
CHMP1A-207ENST00000549328 TTC26A0AVF1 554 aa20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 SYN3O14994 580 aa20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 ADAM12O43184 909 aa20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 PDIA4P13667 645 aaKnown RBP20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 TKTP29401 623 aaKnown RBP20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 HOXA9P31269 272 aa20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 OR1D2P34982 312 aa20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 BRCC3P46736 316 aa20.34■□□□□ 0.85
CHMP1A-207ENST00000549328 LIN9Q5TKA1 542 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms