RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 STKLD1Q8NE28 680 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SPATA17Q96L03 361 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 COLEC11Q9BWP8 271 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 MROH8Q9H579 483 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SLC38A7Q9NVC3 462 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SLC13A4Q9UKG4 626 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 CNTNAP1P78357 1384 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 WNK3Q9BYP7 1800 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 NPHP3-ACAD11A0A0J9YXS1 232 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 MSH4O15457 936 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SDC4P31431 198 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 COG7P83436 770 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 PDCLQ13371 301 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SLC12A1Q13621 1099 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 KRT71Q3SY84 523 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 CHADLQ6NUI6 762 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SLC30A9Q6PML9 568 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SAMSN1Q9NSI8 373 aaKnown RBP9.12□□□□□ -0.95
CLIP1-218ENST00000545889 MSRAQ9UJ68 235 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 UBR3Q6ZT12 1888 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 C17orf102A2RUQ5 167 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 HBP1O60381 514 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 CPP00450 1065 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 BASP1P80723 227 aaKnown RBP9.12□□□□□ -0.95
CLIP1-218ENST00000545889 AMPD2Q01433 879 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 LAMB3Q13751 1172 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 ACBD5Q5T8D3 534 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-218ENST00000545889 GKAP1Q5VSY0 366 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-218ENST00000545889 TMEM270Q6UE05 265 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 BBOF1Q8ND07 529 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 ACRBPQ8NEB7 543 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 UCMAQ8WVF2 138 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 WDR24Q96S15 920 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 DGAT1O75907 488 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 URODP06132 367 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 ATP1A3P13637 1013 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 PSMA2P25787 234 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 CDC25CP30307 473 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 DRP2Q13474 957 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 TUBB2AQ13885 445 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 PTK2BQ14289 1009 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 EPHA7Q15375 998 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 THEMIS2Q5TEJ8 643 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 DENND2CQ68D51 928 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SLITRK1Q96PX8 696 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 MXRA8Q9BRK3 442 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 TUBB2BQ9BVA1 445 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 NUF2Q9BZD4 464 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 TYW1Q9NV66 732 aaKnown RBP9.12□□□□□ -0.95
CLIP1-218ENST00000545889 KLHL8Q9P2G9 620 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-218ENST00000545889 PCDHB12Q9Y5F1 795 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 SNX9Q9Y5X1 595 aa9.12□□□□□ -0.95
CLIP1-218ENST00000545889 IGKV6D-41A0A0C4DH26 115 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 NOL3O60936 208 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 INHBAP08476 426 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SKIP12755 728 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PPP4R4Q6NUP7 873 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 CCDC62Q6P9F0 684 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SFR1Q86XK3 245 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 VSIG1Q86XK7 387 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SP110Q9HB58 689 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 ADAM22Q9P0K1 906 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 AGO2Q9UKV8 859 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SNED1Q8TER0 1413 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 TRIM49BA6NDI0 452 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 ADAMTS3O15072 1205 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 GCLMP48507 274 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SFSWAPQ12872 951 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 RNF168Q8IYW5 571 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SHCBP1Q8NEM2 672 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 RAD54LQ92698 747 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 STMN2Q93045 179 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 MAGOHBQ96A72 148 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 WDR18Q9BV38 432 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 FSD1LQ9BXM9 530 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 RBAKQ9NYW8 714 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 KLHL33A6NCF5 533 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 ASAP2O43150 1006 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 CCNE1P24864 410 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 COPB1P53618 953 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 CDK17Q00537 523 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PPP4R3CPQ6ZMV5 832 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 CATSPERGQ6ZRH7 1159 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PARP9Q8IXQ6 854 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 COL4A1P02462 1669 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 FAM86B1E9PN63 330 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 M0QYV0 167 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 NVLO15381 856 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 CREB3O43889 395 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PFDN1O60925 122 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 FAM86B2P0C5J1 330 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PCSK1P29120 753 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 KPNA2P52292 529 aaKnown RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 ZNF235Q14590 738 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SLC35G1Q2M3R5 365 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 WDR72Q3MJ13 1102 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 HIBCHQ6NVY1 386 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-218ENST00000545889 PCGF5Q86SE9 256 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 SIAH1Q8IUQ4 282 aa9.11□□□□□ -0.95
CLIP1-218ENST00000545889 KLHL23Q8NBE8 558 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms