RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TAF4BQ92750 862 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 LBHD1Q9BQE6 289 aaPredicted RBP17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 OSBPL7Q9BZF2 842 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 XPO4Q9C0E2 1151 aaKnown RBP17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 VPS16Q9H269 839 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 PDE11AQ9HCR9 933 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 PARP2Q9UGN5 583 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 ITGA11Q9UKX5 1188 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 COL4A6Q14031 1691 aa17.32■□□□□ 0.36
PRPF40A-212ENST00000545856 LACTBL1A8MY62 500 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 STAU1O95793 577 aaKnown RBP17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 AMHP03971 560 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 ZNF75DP51815 510 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 OSTNP61366 133 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 MYL7Q01449 175 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 UBXN1Q04323 297 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 GRIK3Q13003 919 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 ZBTB6Q15916 424 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 C1orf220Q5T0J3 134 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 AGMOQ6ZNB7 445 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 DEFB128Q7Z7B8 93 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 FMNL3Q8IVF7 1028 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 CRIPAKQ8N1N5 446 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 CCDC150Q8NCX0 1101 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 FBXL13Q8NEE6 735 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 BEST2Q8NFU1 509 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 URGCPQ8TCY9 931 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 PLEKHO2Q8TD55 490 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 NUP58Q9BVL2 599 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 EDEM3Q9BZQ6 932 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 PLCB1Q9NQ66 1216 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 FBXL5Q9UKA1 691 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 PCDHB7Q9Y5E2 793 aa17.31■□□□□ 0.36
PRPF40A-212ENST00000545856 PES1O00541 588 aaKnown RBP17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 TRIM49P0CI25 452 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 TRIM49CP0CI26 452 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 ITGB8P26012 769 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 ATICP31939 592 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 PLCB2Q00722 1185 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 EXOC3L4Q17RC7 722 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 SV2AQ7L0J3 742 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 TMEM192Q8IY95 271 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 VWCEQ96DN2 955 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 UROC1Q96N76 676 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 IMPG2Q9BZV3 1241 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 TMEM117Q9H0C3 514 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 LRFN2Q9ULH4 789 aa17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 R3HCC1Q9Y3T6 440 aaKnown RBP17.3■□□□□ 0.36
PRPF40A-212ENST00000545856 SMIM28A0A1B0GU29 152 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 ARL5CA6NH57 179 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 GOLGA6L6A8MZA4 724 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 C4BPAP04003 597 aaKnown RBP17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 THP07101 528 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 LRPAP1P30533 357 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 RPL9P32969 192 aaKnown RBP17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 PBX1P40424 430 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 PNPLA4P41247 253 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 KCNJ6P48051 423 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 DLG4P78352 724 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 PPP3CAQ08209 521 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 EPC2Q52LR7 807 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 SEZ6Q53EL9 994 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 SPECC1LQ69YQ0 1117 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 EFCAB13Q8IY85 973 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 ABI1Q8IZP0 508 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 LRRC52Q8N7C0 313 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 DPF3Q92784 378 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 KIF12Q96FN5 646 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 NAP1L5Q96NT1 182 aaPredicted RBP17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 PPP1R10Q96QC0 940 aaKnown RBP17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 VRTNQ9H8Y1 702 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 HES2Q9Y543 173 aa17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.29■□□□□ 0.367e-10■■■■□ 22.7
PRPF40A-212ENST00000545856 MKI67P46013 3256 aaKnown RBP17.29■□□□□ 0.36
PRPF40A-212ENST00000545856 ADCY5O95622 1261 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 FGBP02675 491 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 AKAP5P24588 427 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 GCLMP48507 274 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 TFAMQ00059 246 aaKnown RBP17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 JADE1Q6IE81 842 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 TRAPPC11Q7Z392 1133 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 VSTM4Q8IW00 320 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 PHOSPHO2Q8TCD6 241 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 BADQ92934 168 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 JAKMIP2Q96AA8 810 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 FAM212AQ96EL1 285 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 DDX27Q96GQ7 796 aaKnown RBP17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 RNF39Q9H2S5 420 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 GCNT4Q9P109 453 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 IMPACTQ9P2X3 320 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 MEFVO15553 781 aaPredicted RBP17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 OFD1O75665 1012 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 NFICP08651 508 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 TPM1P09493 284 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 MLH1P40692 756 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 RBP5P82980 135 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 BIRC3Q13489 604 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 TRPC3Q13507 836 aa17.28■□□□□ 0.36
PRPF40A-212ENST00000545856 SGSM1Q2NKQ1 1148 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms