RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 BHMT2Q9H2M3 363 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 PIDD1Q9HB75 910 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 ZDHHC7Q9NXF8 308 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 EPS15L1Q9UBC2 864 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 LRWD1Q9UFC0 647 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 KIAA1024Q9UPX6 916 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 GDAQ9Y2T3 454 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 SF3B1O75533 1304 aaKnown RBP eCLIP9.32□□□□□ -0.928e-6■■■■■ 107
USP28-215ENST00000545608 KRBA1A5PL33 1030 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 CFHP08603 1231 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 AOC1P19801 751 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 TRAPPC10P48553 1259 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 NTHL1P78549 312 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 HMGN5P82970 282 aaKnown RBP9.32□□□□□ -0.92
USP28-215ENST00000545608 CREMQ03060 361 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 GNL2Q13823 731 aaKnown RBP9.32□□□□□ -0.92
USP28-215ENST00000545608 PPP2R5AQ15172 486 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 ATF7IP2Q5U623 682 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 HAUS3Q68CZ6 603 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 CD300LGQ6UXG3 332 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 SIX5Q8N196 739 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 FAM184AQ8NB25 1140 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 PIK3R5Q8WYR1 880 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 IFT74Q96LB3 600 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 ZSCAN31Q96LW9 406 aaPredicted RBP9.32□□□□□ -0.92
USP28-215ENST00000545608 KCNK17Q96T54 332 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 DDX19AQ9NUU7 478 aaKnown RBP9.32□□□□□ -0.92
USP28-215ENST00000545608 FBXW11Q9UKB1 542 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 FBXL21Q9UKT6 434 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 PCDHB6Q9Y5E3 794 aa9.32□□□□□ -0.92
USP28-215ENST00000545608 PP2D1A8MPX8 630 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 PROB1E7EW31 1015 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 E9PMD0 336 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 K7ERI5 159 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 ST18O60284 1047 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 LAMP2P13473 410 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 U2AF2P26368 475 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP28-215ENST00000545608 CDC25AP30304 524 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 EFNA5P52803 228 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 PDIA5Q14554 519 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 PSMD5Q16401 504 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 IL17AQ16552 155 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 DCAF4L1Q3SXM0 396 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 GLRA4Q5JXX5 417 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 DCLRE1AQ6PJP8 1040 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 GET4Q7L5D6 327 aaPredicted RBP9.31□□□□□ -0.92
USP28-215ENST00000545608 ASCL5Q7RTU5 278 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 GRASPQ7Z6J2 395 aaPredicted RBP9.31□□□□□ -0.92
USP28-215ENST00000545608 DAW1Q8N136 415 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 CEP120Q8N960 986 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 IGSF22Q8N9C0 903 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 SNX29Q8TEQ0 813 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 KIFAP3Q92845 792 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 POM121Q96HA1 1249 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 PPP1R10Q96QC0 940 aaKnown RBP9.31□□□□□ -0.92
USP28-215ENST00000545608 RPP25Q9BUL9 199 aaKnown RBP9.31□□□□□ -0.92
USP28-215ENST00000545608 PRM3Q9NNZ6 103 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 SH2B1Q9NRF2 756 aaPredicted RBP9.31□□□□□ -0.92
USP28-215ENST00000545608 WNT16Q9UBV4 365 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 NOL7Q9UMY1 257 aaKnown RBP9.31□□□□□ -0.92
USP28-215ENST00000545608 TNFSF13BQ9Y275 285 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 PLXNA3P51805 1871 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 DENND4AQ7Z401 1863 aa9.31□□□□□ -0.92
USP28-215ENST00000545608 C2orf16Q68DN1 1984 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 CCDC169A6NNP5 214 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 ANHXE9PGG2 379 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 C3orf80F5H4A9 247 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 CCL16O15467 120 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 B3GAT3O94766 335 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 C8AP07357 584 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 SRFP11831 508 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 FGFR3P22607 806 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 FSHRP23945 695 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 NBL1P41271 181 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 BRCC3P46736 316 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 NPTX2P47972 431 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 CLCNKBP51801 687 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 PEX3P56589 373 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 ELAVL2Q12926 359 aaKnown RBP9.3□□□□□ -0.92
USP28-215ENST00000545608 MAPK7Q13164 816 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 HTR4Q13639 388 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 RAB33AQ14088 237 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 PPM1LQ5SGD2 360 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 RSPO2Q6UXX9 243 aaPredicted RBP9.3□□□□□ -0.92
USP28-215ENST00000545608 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.3□□□□□ -0.92
USP28-215ENST00000545608 TAS1R3Q7RTX0 852 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 KCNK18Q7Z418 384 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 CCDC105Q8IYK2 499 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 DTWD2Q8NBA8 298 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 C3orf58Q8NDZ4 430 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 GPR152Q8TDT2 470 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 NXPE3Q969Y0 559 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 ACO2Q99798 780 aaKnown RBP9.3□□□□□ -0.92
USP28-215ENST00000545608 RTP3Q9BQQ7 232 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 MMTAG2Q9BU76 263 aaKnown RBP9.3□□□□□ -0.92
USP28-215ENST00000545608 RUSC1Q9BVN2 902 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 CDT1Q9H211 546 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 GOLGA2P5Q9HBQ8 144 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 PTPRHQ9HD43 1115 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms