RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GH1P01241 217 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 RARAP10276 462 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 ATP6V1C1P21283 382 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 SLC44A4Q53GD3 710 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 C6orf89Q6UWU4 347 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 CCDC117Q8IWD4 279 aaPredicted RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 FAM81AQ8TBF8 368 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 ZNF570Q96NI8 536 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 REEP2Q9BRK0 252 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 CALN1Q9BXU9 219 aa15.06■□□□□ 0
LIMS1-215ENST00000544547 RANBP17Q9H2T7 1088 aaKnown RBP15.06■□□□□ 0
LIMS1-215ENST00000544547 GGPS1O95749 300 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 RASA1P20936 1047 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 YY1P25490 414 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 MMP13P45452 471 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 FMO5P49326 533 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 WDR75Q8IWA0 830 aaKnown RBP15.05■□□□□ 0
LIMS1-215ENST00000544547 ACAP3Q96P50 834 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 PCDHB4Q9Y5E5 795 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 MYH10P35580 1976 aa15.05■□□□□ 0
LIMS1-215ENST00000544547 AKR1B1P15121 316 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 CYLC2Q14093 348 aaPredicted RBP15.05■□□□□ -0
LIMS1-215ENST00000544547 PDIA5Q14554 519 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 XKR9Q5GH70 373 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 GPATCH4Q5T3I0 446 aaKnown RBP15.05■□□□□ -0
LIMS1-215ENST00000544547 ATG16L1Q676U5 607 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 LCA5Q86VQ0 697 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 RHPN2Q8IUC4 686 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 PAGR1Q9BTK6 254 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 AIPL1Q9NZN9 384 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 APOBEC2Q9Y235 224 aaKnown RBP15.05■□□□□ -0
LIMS1-215ENST00000544547 ARHGAP10A1A4S6 786 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 DDX3XO00571 662 aaKnown RBP eCLIP15.05■□□□□ -03e-8■■□□□ 12.2
LIMS1-215ENST00000544547 TTC4O95801 387 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 PYGLP06737 847 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 CNGA3Q16281 694 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 DAB2IPQ5VWQ8 1189 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 INTS5Q6P9B9 1019 aaKnown RBP15.05■□□□□ -0
LIMS1-215ENST00000544547 FBXO33Q7Z6M2 555 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 RFX6Q8HWS3 928 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 TRIM42Q8IWZ5 723 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 GALNT4Q8N4A0 578 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 ZSWIM1Q9BR11 485 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 CD209Q9NNX6 404 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 ARMCX1Q9P291 453 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 APEX2Q9UBZ4 518 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 AFF2P51816 1311 aa15.05■□□□□ -0
LIMS1-215ENST00000544547 FOXN3O00409 490 aaPredicted RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 PDXKO00764 312 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 SMNDC1O75940 238 aaKnown RBP eCLIP15.04■□□□□ -0
LIMS1-215ENST00000544547 SLC34A1Q06495 639 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 NFIXQ14938 502 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 MIGA2Q7L4E1 593 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 NUDCD3Q8IVD9 361 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 MAB21L3Q8N8X9 362 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 AGR3Q8TD06 166 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 KRT35Q92764 455 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 MPP4Q96JB8 637 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 RMDN2Q96LZ7 410 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 ARL4CP56559 192 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 ZNF268Q14587 947 aaPredicted RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 ADGRF4Q8IZF3 695 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 NEDD1Q8NHV4 660 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 CLMNQ96JQ2 1002 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 PWWP2AQ96N64 755 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 TTC25Q96NG3 672 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 CNOT7Q9UIV1 285 aaKnown RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 MRPL11Q9Y3B7 192 aaKnown RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 SCINQ9Y6U3 715 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 RGPD8O14715 1765 aaPredicted RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 CREB1P16220 341 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 PPP1R15BQ5SWA1 713 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 SH2D3AQ9BRG2 576 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 ZWILCHQ9H900 591 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 MYO3BQ8WXR4 1341 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 TLR2O60603 784 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 HNRNPCL1O60812 293 aaKnown RBP15.04■□□□□ -0
LIMS1-215ENST00000544547 POLR2MP0CAP2 368 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 SBK1Q52WX2 424 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 ATP8B4Q8TF62 1192 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 AMNQ9BXJ7 453 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 TTYH3Q9C0H2 523 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 MANSC1Q9H8J5 431 aa15.04■□□□□ -0
LIMS1-215ENST00000544547 PFASO15067 1338 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 HNRNPH3P31942 346 aaKnown RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 WASHC2DQ5SRD0 308 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 C16orf87Q6PH81 154 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 ARID3BQ8IVW6 561 aaPredicted RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 FAM13CQ8NE31 585 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 CKAP2Q8WWK9 683 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 IL17RBQ9NRM6 502 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 NR2E1Q9Y466 385 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 KIAA0391O15091 583 aaKnown RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 ADCY3O60266 1144 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 AKAP3O75969 853 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 SF3B3Q15393 1217 aaKnown RBP15.03■□□□□ -0
LIMS1-215ENST00000544547 EDRF1Q3B7T1 1238 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 IYDQ6PHW0 289 aa15.03■□□□□ -0
LIMS1-215ENST00000544547 CYFIP1Q7L576 1253 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms