RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MCL1Q07820 350 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 GPS2Q13227 327 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 ARHGAP44Q17R89 818 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 TSHZ1Q6ZSZ6 1077 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 FMNL3Q8IVF7 1028 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 RIN2Q8WYP3 895 aaPredicted RBP15.43■□□□□ 0.06
VPS33A-209ENST00000544349 KAT2BQ92831 832 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 VTI1AQ96AJ9 217 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 FDXACB1Q9BRP7 624 aaPredicted RBP15.43■□□□□ 0.06
VPS33A-209ENST00000544349 RAB20Q9NX57 234 aa15.43■□□□□ 0.06
VPS33A-209ENST00000544349 FAM189A1O60320 539 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 VTNP04004 478 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 TNNI1P19237 187 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 MCM3P25205 808 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 AARSP49588 968 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS33A-209ENST00000544349 CPT1AP50416 773 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 LACTBP83111 547 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-209ENST00000544349 PRPF4BQ13523 1007 aaKnown RBP15.42■□□□□ 0.06
VPS33A-209ENST00000544349 MAP9Q49MG5 647 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 SEZ6Q53EL9 994 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 ZBTB33Q86T24 672 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 RNF10Q8N5U6 811 aaKnown RBP15.42■□□□□ 0.06
VPS33A-209ENST00000544349 FAM71BQ8TC56 605 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 AP5M1Q9H0R1 490 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 VIPAS39Q9H9C1 493 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 PTPRHQ9HD43 1115 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 SETD4Q9NVD3 440 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 PRMT7Q9NVM4 692 aaPredicted RBP15.42■□□□□ 0.06
VPS33A-209ENST00000544349 CNTNAP2Q9UHC6 1331 aa15.42■□□□□ 0.06
VPS33A-209ENST00000544349 GRID2IPA4D2P6 1211 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 FOXN3O00409 490 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-209ENST00000544349 OGTO15294 1046 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 AOC2O75106 756 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 C4BPAP04003 597 aaKnown RBP15.41■□□□□ 0.06
VPS33A-209ENST00000544349 IQCF3P0C7M6 154 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 ANXA13P27216 316 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 FAM187BQ17R55 369 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 KIAA0753Q2KHM9 967 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 CCDC181Q5TID7 509 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 ATF7IP2Q5U623 682 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 GOLPH3Q9H4A6 298 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 GABRQQ9UN88 632 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 PCDHGC5Q9Y5F6 944 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 B4GALT5O43286 388 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 CCDC172P0C7W6 258 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 SMIM10L2AP0DMW4 78 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 SMIM10L2BP0DMW5 78 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 TNFSF9P41273 254 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 DEFB115Q30KQ5 88 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 ZACNQ401N2 412 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 LMBRD2Q68DH5 695 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-209ENST00000544349 MPZL3Q6UWV2 235 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 BRSK2Q8IWQ3 736 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 KIAA0319LQ8IZA0 1049 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 TXLNBQ8N3L3 684 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 LMBR1Q8WVP7 490 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 PPP1R16BQ96T49 567 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 LUC7LQ9NQ29 371 aaKnown RBP15.41■□□□□ 0.06
VPS33A-209ENST00000544349 TNFSF13BQ9Y275 285 aa15.41■□□□□ 0.06
VPS33A-209ENST00000544349 NRCAMQ92823 1304 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 CCDC66A2RUB6 948 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 RNF40O75150 1001 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 AKR1A1P14550 325 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 HNRNPH2P55795 449 aaKnown RBP15.4■□□□□ 0.06
VPS33A-209ENST00000544349 TRPV1Q8NER1 839 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 OLIG1Q8TAK6 271 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 KAT5Q92993 513 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 FAM84AQ96KN4 292 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 NT5C1BQ96P26 610 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 CGRRF1Q99675 332 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.4■□□□□ 0.06
VPS33A-209ENST00000544349 CPSF3Q9UKF6 684 aaKnown RBP15.4■□□□□ 0.06
VPS33A-209ENST00000544349 PTPRJQ12913 1337 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 AGPSO00116 658 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 HAS3O00219 553 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 ZEB2O60315 1214 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 ZC3H11AO75152 810 aaKnown RBP eCLIP15.4■□□□□ 0.06
VPS33A-209ENST00000544349 CSDE1O75534 798 aaKnown RBP15.4■□□□□ 0.06
VPS33A-209ENST00000544349 FLT3LGP49771 235 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 BEX3Q00994 111 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 MFSD10Q14728 455 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 KIF22Q14807 665 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 AMHR2Q16671 573 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 PTPROQ16827 1216 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 HSP90B2PQ58FF3 399 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 C10orf76Q5T2E6 689 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 MEI1Q5TIA1 1274 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 TDRD10Q5VZ19 366 aaKnown RBP15.4■□□□□ 0.06
VPS33A-209ENST00000544349 EEF1DP3Q658K8 133 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 VPS36Q86VN1 386 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 PPM1KQ8N3J5 372 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 HELQQ8TDG4 1101 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 TRIB2Q92519 343 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 CAPNS2Q96L46 248 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 KREMEN1Q96MU8 473 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 PLEKHA4Q9H4M7 779 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 FAM204AQ9H8W3 233 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 MED4Q9NPJ6 270 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 PSD3Q9NYI0 1048 aa15.4■□□□□ 0.06
VPS33A-209ENST00000544349 NENFQ9UMX5 172 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms