RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RAB11FIP4Q86YS3 637 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 PLEKHM2Q8IWE5 1019 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 YAF2Q8IY57 180 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 COLGALT2Q8IYK4 626 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CHCHD4Q8N4Q1 142 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 LINC01465Q8N7H1 131 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 GLIS3Q8NEA6 775 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 GAB3Q8WWW8 586 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 RSPH1Q8WYR4 309 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 DNASE1L2Q92874 299 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 IRF7Q92985 503 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 ELSPBP1Q96BH3 223 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 LOXL4Q96JB6 756 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 GAD1Q99259 594 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CLSTN3Q9BQT9 956 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CORO1BQ9BR76 489 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 ZNF577Q9BSK1 485 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 IER2Q9BTL4 223 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 LY9Q9HBG7 655 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 ZFP14Q9HCL3 533 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 TMEM9BQ9NQ34 198 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CHST7Q9NS84 486 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 SUCLA2Q9P2R7 463 aaPredicted RBP5.35□□□□□ -1.55
LIMS1-214ENST00000542845 CACNG4Q9UBN1 327 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 FBXW11Q9UKB1 542 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 INVSQ9Y283 1065 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 RBM19Q9Y4C8 960 aaKnown RBP5.35□□□□□ -1.55
LIMS1-214ENST00000542845 NEUROG3Q9Y4Z2 214 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 PCDHA10Q9Y5I2 948 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 NBEAQ8NFP9 2946 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 ATG2BQ96BY7 2078 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 NOTCH4Q99466 2003 aa5.35□□□□□ -1.55
LIMS1-214ENST00000542845 KIF26AQ9ULI4 1882 aaPredicted RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ZZEF1O43149 2961 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 WDFY3Q8IZQ1 3526 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SPAG17Q6Q759 2223 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CNTNAP2Q9UHC6 1331 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 TMEM150BA6NC51 233 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ARL5CA6NH57 179 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PATE3B3GLJ2 98 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 IPO5O00410 1097 aaKnown RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 MEIS1O00470 390 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 KHNYNO15037 678 aaKnown RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 DHX15O43143 795 aaKnown RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ADAM12O43184 909 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CHMP2AO43633 222 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ZNF623O75123 536 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PLEKHA8P1O95397 391 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 RHOP08100 348 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CCNYL3P0C7X3 344 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SRGAP2CP0DJJ0 459 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CALM1P0DP23 149 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CALM2P0DP24 149 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CALM3P0DP25 149 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PTPN2P17706 415 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PSMC3P17980 439 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 RXRAP19793 462 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 OR1D2P34982 312 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 RDXP35241 583 aaKnown RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 MLH1P40692 756 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 NT5C2P49902 561 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 HNRNPUQ00839 825 aaKnown RBP eCLIP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 CREMQ03060 361 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 NCOA4Q13772 614 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PON2Q15165 354 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ELF2Q15723 593 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PSMD5Q16401 504 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SLC5A9Q2M3M2 681 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 EML3Q32P44 896 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 FAM78AQ5JUQ0 283 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 RTP2Q5QGT7 225 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 FAM171A1Q5VUB5 890 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 NFXL1Q6ZNB6 911 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 MRPL10Q7Z7H8 261 aaKnown RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ZNF605Q86T29 641 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 LURAP1LQ8IV03 231 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SRBD1Q8N5C6 995 aaKnown RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ARMC2Q8NEN0 867 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 TCEAL4Q96EI5 215 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 FAM167AQ96KS9 214 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ZFP42Q96MM3 310 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SPZ1Q9BXG8 430 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SLC32A1Q9H598 525 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 DIAPH3Q9NSV4 1193 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 POLR3BQ9NW08 1133 aaPredicted RBP5.34□□□□□ -1.55
LIMS1-214ENST00000542845 GDE1Q9NZC3 331 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 KLK14Q9P0G3 267 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 ADAM28Q9UKQ2 775 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 SLC8A2Q9UPR5 921 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 HES2Q9Y543 173 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 PCDHGA5Q9Y5G8 931 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 EML5Q05BV3 1969 aa5.34□□□□□ -1.55
LIMS1-214ENST00000542845 AKAP13Q12802 2813 aa5.33□□□□□ -1.56
LIMS1-214ENST00000542845 LNP1A1A4G5 178 aa5.33□□□□□ -1.56
LIMS1-214ENST00000542845 FAM86B1E9PN63 330 aa5.33□□□□□ -1.56
LIMS1-214ENST00000542845 ZNF862O60290 1169 aa5.33□□□□□ -1.56
LIMS1-214ENST00000542845 RHOBTB1O94844 696 aa5.33□□□□□ -1.56
LIMS1-214ENST00000542845 PAPLNO95428 1278 aa5.33□□□□□ -1.56
LIMS1-214ENST00000542845 F12P00748 615 aaPredicted RBP5.33□□□□□ -1.56
LIMS1-214ENST00000542845 LRG1P02750 347 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms