RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CTAG1AP78358 180 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 BMT2Q1RMZ1 405 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 HERC4Q5GLZ8 1057 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 GKAP1Q5VSY0 366 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 LLGL2Q6P1M3 1020 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 SFR1Q86XK3 245 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 IFT20Q8IY31 132 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 ANKRD13CQ8N6S4 541 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 PIGOQ8TEQ8 1089 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 ZFAND2BQ8WV99 257 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 MS4A14Q96JA4 679 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 CEP63Q96MT8 703 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 FIZ1Q96SL8 496 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 DNAJC7Q99615 494 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 RNF146Q9NTX7 359 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 RBM12Q9NTZ6 932 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 DCAF16Q9NXF7 216 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 PAIP2BQ9ULR5 123 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 C15orf41Q9Y2V0 281 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 BZW2Q9Y6E2 419 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 SLC30A1Q9Y6M5 507 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 LOXHD1Q8IVV2 1947 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 TBCAO75347 108 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 HEXIM1O94992 359 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 TCF3P15923 654 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 MARSP56192 900 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 XRCC4Q13426 336 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 HLTFQ14527 1009 aaKnown RBP eCLIP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 COG2Q14746 738 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 SPA17Q15506 151 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 CNGA3Q16281 694 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 MIS18BP1Q6P0N0 1132 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 RNF207Q6ZRF8 634 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 IQCKQ8N0W5 287 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 CCDC63Q8NA47 563 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 CAVIN3Q969G5 261 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 NHEJ1Q9H9Q4 299 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 CAPN11Q9UMQ6 739 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 SIK3Q9Y2K2 1263 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 CAPN6Q9Y6Q1 641 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 MYPNQ86TC9 1320 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 A0A1B0GVG6 124 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 FAM25EA8MYX2 175 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 TACC1O75410 805 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 MYZAPP0CAP1 466 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 EIF2AK2P19525 551 aaKnown RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 ENDOUP21128 410 aaKnown RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 TRADDQ15628 312 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 VWA3BQ502W6 1294 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 FAM133BQ5BKY9 247 aaKnown RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 SNRNP48Q6IEG0 339 aaKnown RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 WDR59Q6PJI9 974 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 MAEAQ7L5Y9 396 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 TPH2Q8IWU9 490 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 ARFGAP2Q8N6H7 521 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 SH3TC2Q8TF17 1288 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 L3MBTL3Q96JM7 780 aaPredicted RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 CEP295NLQ96MC4 621 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 LXNQ9BS40 222 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 NOC4LQ9BVI4 516 aaKnown RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 ZCWPW1Q9H0M4 648 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 AGPAT5Q9NUQ2 364 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 ZMYM2Q9UBW7 1377 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 ANO9A1A5B4 782 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 GFPT2O94808 682 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 MYBP10242 640 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 HALP42357 657 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 MTIF2P46199 727 aaKnown RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 PAK2Q13177 524 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 PRKG1Q13976 671 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 BAATQ14032 418 aaPredicted RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 SPDYCQ5MJ68 293 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 TREML2Q5T2D2 321 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 C9orf131Q5VYM1 1079 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 TRIM68Q6AZZ1 485 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 OXCT2Q9BYC2 517 aaPredicted RBP8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 VCX3BQ9H321 246 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 OLFML3Q9NRN5 406 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 GGA2Q9UJY4 613 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 TRAF3IP3Q9Y228 551 aa8.53□□□□□ -1.04
PDLIM5-221ENST00000542407 ASTN1O14525 1302 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 LRRC37A2A6NM11 1700 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 FOXD2O60548 495 aaPredicted RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 ATP9AO75110 1047 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 RGS20O76081 388 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 KRT18P05783 430 aaKnown RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 PSMD7P51665 324 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 FKBP3Q00688 224 aaKnown RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 PDAP1Q13442 181 aaKnown RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 BIRC3Q13489 604 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 MTMR1Q13613 665 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 KCTD2Q14681 263 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 RASA2Q15283 850 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 MAN2A1Q16706 1144 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 EDRF1Q3B7T1 1238 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 GLE1Q53GS7 698 aaKnown RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 FIGNQ5HY92 759 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 NCCRP1Q6ZVX7 275 aaPredicted RBP8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 RELL1Q8IUW5 271 aa8.52□□□□□ -1.04
PDLIM5-221ENST00000542407 NELFCDQ8IXH7 590 aa8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms