RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 NTHL1P78549 312 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 DSG1Q02413 1049 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 EMC2Q15006 297 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 KARSQ15046 597 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MLF2Q15773 248 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 UBXN11Q5T124 520 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 RESP18Q5W5W9 173 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 SHC4Q6S5L8 630 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 TSSK4Q6SA08 328 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 PADI6Q6TGC4 694 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CCDC73Q6ZRK6 1079 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 KCNK18Q7Z418 384 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 SRGAP1Q7Z6B7 1085 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MAML2Q8IZL2 1156 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 SYT2Q8N9I0 419 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CNNM3Q8NE01 707 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MCPH1Q8NEM0 835 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 RASSF8Q8NHQ8 419 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 RABGGTAQ92696 567 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CPB2Q96IY4 423 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MTRQ99707 1265 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 TRIM6Q9C030 488 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 BHMT2Q9H2M3 363 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 RNF39Q9H2S5 420 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MINDY3Q9H8M7 445 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 UBN1Q9NPG3 1134 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 XPNPEP1Q9NQW7 623 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 BLOC1S4Q9NUP1 217 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MIOSQ9NXC5 875 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 ZDHHC7Q9NXF8 308 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 KCND2Q9NZV8 630 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 STK17AQ9UEE5 414 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 MTF2Q9Y483 593 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 HES2Q9Y543 173 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 IPPQ9Y573 584 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CACNA1IQ9P0X4 2223 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 FAM237AA0A1B0GTK4 181 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 A0A1W2PQ27 194 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 A0A1W2PQ64 194 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 A0A1W2PQD8 194 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 ARL5CA6NH57 179 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 SPTLC1O15269 473 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 CCL16O15467 120 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 USO1O60763 962 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 TADA2AO75478 443 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 SLC12A3P55017 1021 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 MXD4Q14582 209 aaPredicted RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 ZRSR1Q15695 479 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 ST3GAL2Q16842 350 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 USP41Q3LFD5 358 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 SLC44A4Q53GD3 710 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 PPM1LQ5SGD2 360 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 LIN9Q5TKA1 542 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 RRAGBQ5VZM2 374 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 FUT10Q6P4F1 479 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 PRSS55Q6UWB4 352 aaPredicted RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 CLEC17AQ6ZS10 378 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 C1orf186Q6ZWK4 172 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 CEP57Q86XR8 500 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 GPR161Q8N6U8 529 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 RNF149Q8NC42 400 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 SMG8Q8ND04 991 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 LRRC15Q8TF66 581 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 HDAC7Q8WUI4 952 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 PRPF31Q8WWY3 499 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 PSPC1Q8WXF1 523 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 LARP4BQ92615 738 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 RAD54LQ92698 747 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 ZFP42Q96MM3 310 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 PLIN2Q99541 437 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 PYM1Q9BRP8 204 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 TIPINQ9BVW5 301 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 EIF2AQ9BY44 585 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 RHOBTB2Q9BYZ6 727 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 GPR62Q9BZJ7 368 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 CUEDC2Q9H467 287 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 FAM13BQ9NYF5 915 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 GMEB2Q9UKD1 530 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 FBXO4Q9UKT5 387 aa9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 SMG5Q9UPR3 1016 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-212ENST00000541770 A0A087X0B3 334 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 PRR5-ARHGAP8B1AHC4 643 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 ZMYND10O75800 440 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 PLA2G4BP0C869 781 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 GUCY2CP25092 1073 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 HOXA11P31270 313 aaPredicted RBP9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 ARL2P36404 184 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 STAT6P42226 847 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 ARHGAP8P85298 464 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 LMNB2Q03252 620 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 PRKCQQ04759 706 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 POU5F1BQ06416 359 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 NCBP1Q09161 790 aaKnown RBP9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 LAMTOR4Q0VGL1 99 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 E2F4Q16254 413 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 LPAL2Q16609 132 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 ZNF528Q3MIS6 628 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 ZBTB41Q5SVQ8 909 aa9.55□□□□□ -0.88
CLSTN3-212ENST00000541770 RINT1Q6NUQ1 792 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms