RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 GRM5P41594 1212 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 YARSP54577 528 aaKnown RBP13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 MLF2Q15773 248 aaPredicted RBP13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 ECM1Q16610 540 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 PABPC1LQ4VXU2 614 aaKnown RBP13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 GLRA4Q5JXX5 417 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 CD300LGQ6UXG3 332 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 NPAS3Q8IXF0 933 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 C4orf32Q8N8J7 132 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 ITFG1Q8TB96 612 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 KCNG4Q8TDN1 519 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 CCDC94Q9BW85 323 aaPredicted RBP13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 RAB34Q9BZG1 259 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 FOXQ1Q9C009 403 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 TMEM134Q9H6X4 195 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 SLC38A7Q9NVC3 462 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 DNMT3BQ9UBC3 853 aaKnown RBP13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 LRWD1Q9UFC0 647 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 NOL7Q9UMY1 257 aaKnown RBP13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 DMDP11532 3685 aa13.19□□□□□ -0.3
CBX3P4-202ENST00000540428 SMIM28A0A1B0GU29 152 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 GLULP15104 373 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 TKTP29401 623 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 MAGEA9P43362 315 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 SNW1Q13573 536 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 GNL2Q13823 731 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 ZNF528Q3MIS6 628 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 SLC44A4Q53GD3 710 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 SLC8B1Q6J4K2 584 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 ALKAL1Q6UXT8 129 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 CCDC83Q8IWF9 413 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 IGSF22Q8N9C0 903 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 C3orf58Q8NDZ4 430 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 ST13P5Q8NFI4 369 aaPredicted RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 ZNF461Q8TAF7 563 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 ACO2Q99798 780 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 MRPL4Q9BYD3 311 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 BCO2Q9BYV7 579 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 CDT1Q9H211 546 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 C17orf75Q9HAS0 396 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 PTPRHQ9HD43 1115 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 DDX19AQ9NUU7 478 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 GDE1Q9NZC3 331 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 KIAA1024Q9UPX6 916 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 MRPS23Q9Y3D9 190 aaKnown RBP13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 R4GN57 208 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 GVINP1Q7Z2Y8 2422 aa13.18□□□□□ -0.3
CBX3P4-202ENST00000540428 ARHGEF37A1IGU5 675 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 LAD1O00515 517 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 SYN3O14994 580 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 ECI2O75521 394 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 ABLIM3O94929 683 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 RHOP08100 348 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 IGFBP6P24592 240 aaPredicted RBP13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 RPL9P32969 192 aaKnown RBP13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 NPTX2P47972 431 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 ROR1Q01973 937 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 DMP1Q13316 513 aaPredicted RBP13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 ZNF568Q3ZCX4 644 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 CEP120Q8N960 986 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 FAM184AQ8NB25 1140 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 SNX29Q8TEQ0 813 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 ZSCAN31Q96LW9 406 aaPredicted RBP13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 DRC1Q96MC2 740 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 NELL2Q99435 816 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 GOLGA2P5Q9HBQ8 144 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 POLD4Q9HCU8 107 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 SH2B1Q9NRF2 756 aaPredicted RBP13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 HCFC1R1Q9NWW0 138 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 PPP4R2Q9NY27 417 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 ARHGAP28Q9P2N2 729 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 KCNG1Q9UIX4 513 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 FBXO4Q9UKT5 387 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 DNM3Q9UQ16 869 aa13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 RBM19Q9Y4C8 960 aaKnown RBP13.17□□□□□ -0.3
CBX3P4-202ENST00000540428 VPS13AQ96RL7 3174 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 CCDC169A6NNP5 214 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 H7C4K7 107 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 PODXLO00592 558 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 TBC1D4O60343 1298 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 MICAL2O94851 1124 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 LRG1P02750 347 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 MCF2P10911 925 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 ATF2P15336 505 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 KCNE1P15382 129 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 PTPN2P17706 415 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 PROZP22891 400 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 U2AF2P26368 475 aaKnown RBP eCLIP13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 ELF1P32519 619 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 BRCC3P46736 316 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 PEX3P56589 373 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 SOX4Q06945 474 aaPredicted RBP13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 VARS2Q5ST30 1063 aaKnown RBP13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 KRT79Q5XKE5 535 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 TCEAL8Q8IYN2 117 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 MAML2Q8IZL2 1156 aaPredicted RBP13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 DAW1Q8N136 415 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 ACAP3Q96P50 834 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 KXD1Q9BQD3 176 aa13.16□□□□□ -0.3
CBX3P4-202ENST00000540428 TIPINQ9BVW5 301 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms