RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PPP3CAQ08209 521 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 SLC10A5Q5PT55 438 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 PLA2G4FQ68DD2 849 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 TMEM179Q6ZVK1 233 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 OSBPL8Q9BZF1 889 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 MARCOQ9UEW3 520 aaPredicted RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 RPTORQ8N122 1335 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 PPP1R12AO14974 1030 aaPredicted RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 VCAM1P19320 739 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 CCNHP51946 323 aaPredicted RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 KLC1Q07866 573 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 MKRN3Q13064 507 aaKnown RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 SNRNP35Q16560 246 aaKnown RBP13.76□□□□□ -0.21
MSH6-210ENST00000540021 PRR5LQ6MZQ0 368 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 CASC4Q6P4E1 433 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 FBXL13Q8NEE6 735 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 CCDC110Q8TBZ0 833 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 FBXO41Q8TF61 875 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 PAGR1Q9BTK6 254 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 MKNK1Q9BUB5 465 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 CALN1Q9BXU9 219 aa13.76□□□□□ -0.21
MSH6-210ENST00000540021 MAP3K7O43318 606 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 ENTPD5O75356 428 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 GJB6O95452 261 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 ARP10275 920 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 SHMT1P34896 483 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 ARFIP2P53365 341 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 MARSP56192 900 aaKnown RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 TAF1BQ53T94 588 aaPredicted RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 SLC30A9Q6PML9 568 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 SCARA5Q6ZMJ2 495 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 MTDHQ86UE4 582 aaKnown RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 GRAMD1AQ96CP6 724 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 KCNMB3Q9NPA1 279 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 NINJ2Q9NZG7 142 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 PRR12Q9ULL5 1215 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 MAD1L1Q9Y6D9 718 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 EIF3DO15371 548 aaKnown RBP eCLIP13.75□□□□□ -0.21
MSH6-210ENST00000540021 ATP5HO75947 161 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 CYP11B1P15538 503 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 KRT4P19013 534 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 SLC8A3P57103 927 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 THEMIS2Q5TEJ8 643 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 ZDHHC24Q6UX98 284 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 FAM228AQ86W67 206 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 OGFOD1Q8N543 542 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 ATXN2LQ8WWM7 1075 aaKnown RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 ZFATQ9P243 1243 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 GTPBP10A4D1E9 387 aaKnown RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 TBX3O15119 743 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 SLITRK3O94933 977 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 UBTFL6P0CB48 400 aaPredicted RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 LMNB2Q03252 620 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 KDSRQ06136 332 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 RHPN2Q8IUC4 686 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 AGGF1Q8N302 714 aaeCLIP13.75□□□□□ -0.21
MSH6-210ENST00000540021 ZNF317Q96PQ6 595 aaPredicted RBP13.75□□□□□ -0.21
MSH6-210ENST00000540021 SIX2Q9NPC8 291 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 UVRAGQ9P2Y5 699 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 USP20Q9Y2K6 914 aa13.75□□□□□ -0.21
MSH6-210ENST00000540021 C5orf60A6NFR6 353 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 ZSCAN5DPP0CG00 497 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 YY1P25490 414 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 CAV1Q03135 178 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 RCN1Q15293 331 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 DNAJC24Q6P3W2 148 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 NLRX1Q86UT6 975 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 RHOT1Q8IXI2 618 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 CFAP36Q96G28 342 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 MAGEB18Q96M61 343 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 RPS6KC1Q96S38 1066 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 SMYD3Q9H7B4 428 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 MRPL47Q9HD33 250 aaKnown RBP13.74□□□□□ -0.21
MSH6-210ENST00000540021 TUFT1Q9NNX1 390 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 GTF3C4Q9UKN8 822 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 AFF2P51816 1311 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 MEIS2O14770 477 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 NVLO15381 856 aaKnown RBP13.74□□□□□ -0.21
MSH6-210ENST00000540021 TRPC3Q13507 836 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 AOC3Q16853 763 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 TAS1R2Q8TE23 839 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 VTI1AQ96AJ9 217 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 ZDHHC18Q9NUE0 388 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 GRHL1Q9NZI5 618 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 SEPT9Q9UHD8 586 aaPredicted RBP13.74□□□□□ -0.21
MSH6-210ENST00000540021 PPATQ06203 517 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 SCYL2Q6P3W7 929 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 NLRP9Q7RTR0 991 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 CCDC125Q86Z20 511 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 RFX6Q8HWS3 928 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 TEKT4Q8WW24 435 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 CKAP2Q8WWK9 683 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 SH3GL3Q99963 347 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 SLC13A1Q9BZW2 595 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 COA1Q9GZY4 146 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 UNC45AQ9H3U1 944 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 OLFML3Q9NRN5 406 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 PCSK1NQ9UHG2 260 aa13.74□□□□□ -0.21
MSH6-210ENST00000540021 PAEPP09466 180 aa13.73□□□□□ -0.21
MSH6-210ENST00000540021 SERPINB6P35237 376 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms