RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CCNA1P78396 465 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 POU5F1Q01860 360 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 CENPCQ03188 943 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CUL2Q13617 745 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CAPSQ13938 189 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 PRKG1Q13976 671 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 MAPK6Q16659 721 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 KYAT1Q16773 422 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 SYDE1Q6ZW31 735 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 PALB2Q86YC2 1186 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 ARFGAP2Q8N6H7 521 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 C12orf50Q8NA57 414 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 ZSWIM2Q8NEG5 633 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 ATP8B4Q8TF62 1192 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 DDX1Q92499 740 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 GLG1Q92896 1179 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 KAT5Q92993 513 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CD101Q93033 1021 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 TMEM143Q96AN5 459 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 OTUD5Q96G74 571 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 L3MBTL3Q96JM7 780 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 MMP19Q99542 508 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 PAGR1Q9BTK6 254 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 AP1M1Q9BXS5 423 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 DDX47Q9H0S4 455 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 GOLPH3Q9H4A6 298 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 SMARCAD1Q9H4L7 1026 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 ELP3Q9H9T3 547 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 ZCCHC17Q9NP64 241 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 TOPORSQ9NS56 1045 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 HOMER3Q9NSC5 361 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 RNF181Q9P0P0 153 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 ANKFY1Q9P2R3 1169 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CNOT8Q9UFF9 292 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 MTRF1LQ9UGC7 380 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 COG5Q9UP83 839 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CNTN6Q9UQ52 1028 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 TRPC6Q9Y210 931 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 PCDHA3Q9Y5H8 950 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 COL1A2P08123 1366 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 PASKQ96RG2 1323 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 DNAJC25-GNG10A0A024R161 153 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 IGKV6-21A0A0C4DH24 114 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 SRRM3A6NNA2 597 aaPredicted RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 ADM5C9JUS6 153 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 AGPSO00116 658 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 NDC80O14777 642 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 PSTPIP1O43586 416 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 HBP1O60381 514 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 SHOX2O60902 331 aaPredicted RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 CNMDO75829 334 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 DDNO94850 711 aaPredicted RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 IL18RAPO95256 599 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 LSM8O95777 96 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 CLTAP09496 248 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 UNGP13051 313 aaPredicted RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 COMTP21964 271 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 GNA15P30679 374 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 MAPK4P31152 587 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 SOX10P56693 466 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 NLRP11P59045 1033 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 RNASE9P60153 205 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 NOP14P78316 857 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 SKOR1P84550 965 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 TAP1Q03518 808 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 C1QBPQ07021 282 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 MCL1Q07820 350 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 PTP4A2Q12974 167 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 TTLL12Q14166 644 aaPredicted RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 TTLL4Q14679 1199 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 MESDQ14696 234 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 ZSCAN26Q16670 478 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 CYP1B1Q16678 543 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 CELF3Q5SZQ8 465 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 DCAF12L1Q5VU92 463 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 TDRD10Q5VZ19 366 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 DPY19L2Q6NUT2 758 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 MPZL3Q6UWV2 235 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 CEP128Q6ZU80 1094 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 HOOK3Q86VS8 718 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 DHX37Q8IY37 1157 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 IQCKQ8N0W5 287 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 GRK7Q8WTQ7 553 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 CDCA5Q96FF9 252 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 GDAP1L1Q96MZ0 367 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 ZIM3Q96PE6 472 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 PCDHB18PQ96TA0 734 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 PCYT2Q99447 389 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 FMO2Q99518 471 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 POP1Q99575 1024 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 GPR20Q99678 358 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 ERP44Q9BS26 406 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 TARS2Q9BW92 718 aaKnown RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 NFKBIZQ9BYH8 718 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 ZNF518BQ9C0D4 1074 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 CCDC113Q9H0I3 377 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 TSPYL1Q9H0U9 437 aa7.09□□□□□ -1.27
USP28-206ENST00000538224 FAM124BQ9H5Z6 455 aaPredicted RBP7.09□□□□□ -1.27
USP28-206ENST00000538224 PCYOX1Q9UHG3 505 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms