RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 ATXN2LQ8WWM7 1075 aaKnown RBP17.13■□□□□ 0.33
CHMP1A-202ENST00000535997 IFT74Q96LB3 600 aa17.13■□□□□ 0.33
CHMP1A-202ENST00000535997 FAM213AQ9BRX8 229 aa17.13■□□□□ 0.33
CHMP1A-202ENST00000535997 CCDC134Q9H6E4 229 aa17.13■□□□□ 0.33
CHMP1A-202ENST00000535997 ZNFX1Q9P2E3 1918 aaKnown RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 ADGRA3Q8IWK6 1321 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 ASAP2O43150 1006 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 SOX10P56693 466 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 AUHQ13825 339 aaKnown RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 WDR44Q5JSH3 913 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 ZNF772Q68DY9 489 aaPredicted RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 SWSAP1Q6NVH7 229 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 PI4K2AQ9BTU6 479 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 RNF146Q9NTX7 359 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 INTS9Q9NV88 658 aaKnown RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 STK32BQ9NY57 414 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 ARHGAP28Q9P2N2 729 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 RIPK3Q9Y572 518 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 WDR81Q562E7 1941 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 VGLL3A8MV65 326 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 TP73O15350 636 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 EXTL3O43909 919 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 KCNA2P16389 499 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 KCNA3P22001 575 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 PTP4A2Q12974 167 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 LACTB2Q53H82 288 aaPredicted RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 NSUN6Q8TEA1 469 aaKnown RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 C1orf54Q8WWF1 131 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 ZNF516Q92618 1163 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 BICD1Q96G01 975 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 CEP89Q96ST8 783 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 SELENOSQ9BQE4 189 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 HOMER3Q9NSC5 361 aa17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 SCAF8Q9UPN6 1271 aaKnown RBP17.12■□□□□ 0.33
CHMP1A-202ENST00000535997 MYPNQ86TC9 1320 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 SMIM23A6NLE4 172 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 CAV1Q03135 178 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 KRT17Q04695 432 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 KCNV1Q6PIU1 500 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 TAX1BP1Q86VP1 789 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 EPS8L3Q8TE67 593 aaKnown RBP17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 GRK7Q8WTQ7 553 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 CDHR1Q96JP9 859 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 KDM4CQ9H3R0 1056 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 XPNPEP1Q9NQW7 623 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 CYP26B1Q9NR63 512 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 MROH7Q68CQ1 1323 aa17.11■□□□□ 0.33
CHMP1A-202ENST00000535997 CYP1A1P04798 512 aaPredicted RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 RRM1P23921 792 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 NSFP46459 744 aaKnown RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CENPCQ03188 943 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 PSMD6Q15008 389 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ZACNQ401N2 412 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CIAPIN1Q6FI81 312 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 RHBDF2Q6PJF5 856 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 TAS1R3Q7RTX0 852 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CCDC25Q86WR0 208 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ANKS4BQ8N8V4 417 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ATL2Q8NHH9 583 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CPA5Q8WXQ8 436 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ATG4CQ96DT6 458 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 SNF8Q96H20 258 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 FNBP1Q96RU3 617 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ATP6V0A4Q9HBG4 840 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 NFASCO94856 1347 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 GAS8O95995 478 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 IVDP26440 423 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ANKRD20A8PQ5CZ79 823 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 UBAP2Q5T6F2 1119 aaKnown RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 PIGWQ7Z7B1 504 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CCDC197Q8NCU1 140 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 UHMK1Q8TAS1 419 aaKnown RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CCT6BQ92526 530 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ELMO3Q96BJ8 720 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 VCPIP1Q96JH7 1222 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CCDC114Q96M63 670 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 SERPINB12Q96P63 405 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 CDC42EP4Q9H3Q1 356 aaKnown RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 JPH1Q9HDC5 661 aaPredicted RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 AAASQ9NRG9 546 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 ASIC3Q9UHC3 531 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 RGPD3A6NKT7 1758 aaPredicted RBP17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 RGPD4Q7Z3J3 1758 aa17.1■□□□□ 0.33
CHMP1A-202ENST00000535997 DNM1LO00429 736 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 RGS20O76081 388 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 C4BPAP04003 597 aaKnown RBP17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 DPEP1P16444 411 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 TNNI1P19237 187 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 SLCO1A2P46721 670 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 LIG4P49917 911 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 OAZ1P54368 228 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 SNX1Q13596 522 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 PTK6Q13882 451 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 ABHD15Q6UXT9 468 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 KCNN1Q92952 543 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 DDX27Q96GQ7 796 aaKnown RBP17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 CHST7Q9NS84 486 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 SLC9A2Q9UBY0 812 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 STYXL1Q9Y6J8 313 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms