RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CDHR1Q96JP9 859 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 WRNIP1Q96S55 665 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 ARHGAP28Q9P2N2 729 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 SRCAPQ6ZRS2 3230 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 EXTL3O43909 919 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 ECEL1O95672 775 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 UNGP13051 313 aaPredicted RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 FGFR4P22455 802 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 RPS12P25398 132 aaKnown RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 DSG3P32926 999 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 FNTAP49354 379 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 POLGP54098 1239 aaPredicted RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 TMEM132BQ14DG7 1078 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 UHMK1Q8TAS1 419 aaKnown RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 PSPC1Q8WXF1 523 aaKnown RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 RAPGEF5Q92565 580 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 FAM81BQ96LP2 452 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 GJA3Q9Y6H8 435 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 NFASCO94856 1347 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 H0YCG3 227 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 PTPRAP18433 802 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 ACOT2P49753 483 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 GMPSP49915 693 aaPredicted RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 OAZ1P54368 228 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 STRN3Q13033 797 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 MKRN4PQ13434 485 aaPredicted RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 BYSLQ13895 437 aaKnown RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 GNPTABQ3T906 1256 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 SGO2Q562F6 1265 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 DALRD3Q5D0E6 543 aaKnown RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 MIS18BP1Q6P0N0 1132 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 ABHD15Q6UXT9 468 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 MCOLN2Q8IZK6 566 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 C12orf50Q8NA57 414 aaPredicted RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 C1orf54Q8WWF1 131 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 CNOT10Q9H9A5 744 aaKnown RBP14.06□□□□□ -0.16
LDLR-203ENST00000535915 CYP39A1Q9NYL5 469 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 PCDHB2Q9Y5E7 798 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 LCTP09848 1927 aa14.06□□□□□ -0.16
LDLR-203ENST00000535915 CLGNO14967 610 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 CPP00450 1065 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 PIK3CAP42336 1068 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 ENPEPQ07075 957 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 CALCOCO2Q13137 446 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 SNX1Q13596 522 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 EMC2Q15006 297 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 XKR3Q5GH77 459 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 PRAMEF18Q5VWM3 479 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 C15orf39Q6ZRI6 1047 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 CCDC25Q86WR0 208 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 MDM1Q8TC05 714 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 ART4Q93070 314 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 CEP89Q96ST8 783 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 TRIM7Q9C029 511 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 LRRC19Q9H756 370 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 KIAA1586Q9HCI6 787 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 A1CFQ9NQ94 594 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 CNOT7Q9UIV1 285 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 MROH7Q68CQ1 1323 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 RGS16O15492 202 aaPredicted RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 HLA-DRAP01903 254 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 PAEPP09466 180 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 RRM1P23921 792 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 NLRP11P59045 1033 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 IFT88Q13099 833 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 SLMAPQ14BN4 828 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 C2CD6Q53TS8 623 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 UBAP2Q5T6F2 1119 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 RNF187Q5TA31 235 aaPredicted RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 SPOPLQ6IQ16 392 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 TMEM143Q96AN5 459 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 PGM2Q96G03 612 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 AZI2Q9H6S1 392 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 ACAD9Q9H845 621 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 AGO2Q9UKV8 859 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 MYPNQ86TC9 1320 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 FSCN2O14926 492 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 ABCD1P33897 745 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 NSFP46459 744 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 PSMD6Q15008 389 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 ZACNQ401N2 412 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 TDRD10Q5VZ19 366 aaKnown RBP14.05□□□□□ -0.16
LDLR-203ENST00000535915 ZNF677Q86XU0 584 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 SELENOSQ9BQE4 189 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 TEX13BQ9BXU2 312 aa14.05□□□□□ -0.16
LDLR-203ENST00000535915 SPATA31C2B4DYI2 1134 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 SUPT20HL2P0C7V6 817 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 RARGP13631 454 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 WNT7BP56706 349 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 BPIFB4P59827 614 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 KRT17Q04695 432 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 ADCY2Q08462 1091 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 QPCTQ16769 361 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 SUPT20HL1Q3ZLR7 823 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 LLGL2Q6P1M3 1020 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 YTHDF3Q7Z739 585 aaKnown RBP14.04□□□□□ -0.16
LDLR-203ENST00000535915 C3orf20Q8ND61 904 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 TRIM11Q96F44 468 aa14.04□□□□□ -0.16
LDLR-203ENST00000535915 AVENQ9NQS1 362 aaPredicted RBP14.04□□□□□ -0.16
LDLR-203ENST00000535915 ADAMTS5Q9UNA0 930 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms