RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CAVIN2O95810 425 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 PRB1P04280 392 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 PLA2G2AP14555 144 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 MLH1P40692 756 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 CREB5Q02930 508 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 ELF2Q15723 593 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 IMMTQ16891 758 aaKnown RBP7.25□□□□□ -1.25
CD44-237ENST00000534082 PLK5Q496M5 336 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 WDR44Q5JSH3 913 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 LARP1BQ659C4 914 aaKnown RBP7.25□□□□□ -1.25
CD44-237ENST00000534082 VITQ6UXI7 678 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 HNRNPLLQ8WVV9 542 aaKnown RBP7.25□□□□□ -1.25
CD44-237ENST00000534082 MSANTD3Q96H12 275 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 PGBD1Q96JS3 809 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 ZC3H10Q96K80 434 aaKnown RBP7.25□□□□□ -1.25
CD44-237ENST00000534082 MRGPRX2Q96LB1 330 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 COLEC11Q9BWP8 271 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 ZFP14Q9HCL3 533 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 GABBR1Q9UBS5 961 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 TCEAL9Q9UHQ7 104 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 APC2O95996 2303 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 NOTCH4Q99466 2003 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 CACNA1EQ15878 2313 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 CCDC163A0A0D9SF12 145 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SPAARA0A1B0GVQ0 90 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 FAM221BA6H8Z2 402 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 ARL5CA6NH57 179 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SLC38A8A6NNN8 435 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 ARNTLO00327 626 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 CDX4O14627 284 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 IFIT3O14879 490 aaKnown RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 ZNF263O14978 683 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 DHX15O43143 795 aaKnown RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 EXTL3O43909 919 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 ZNF862O60290 1169 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 C1QL1O75973 258 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 PSAPP07602 524 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 RHOP08100 348 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 PSMC3P17980 439 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SOX9P48436 509 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SCNN1GP51170 649 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SIM1P81133 766 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 PRKCEQ02156 737 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SCAPQ12770 1279 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 PSMD5Q16401 504 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 UAP1L1Q3KQV9 507 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 FAM78AQ5JUQ0 283 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 DGKKQ5KSL6 1271 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 UBXN11Q5T124 520 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 AXDND1Q5T1B0 1012 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 ZNF746Q6NUN9 644 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 C1orf228Q6PIY5 440 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 CATIPQ7Z7H3 387 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 ZNF410Q86VK4 478 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 TICAM2Q86XR7 235 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SMAP1Q8IYB5 467 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 DEPDC1BQ8WUY9 529 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 PIK3R5Q8WYR1 880 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 NLRP4Q96MN2 994 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 GAD1Q99259 594 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 CLSTN3Q9BQT9 956 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 INO80BQ9C086 356 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 DUSP15Q9H1R2 295 aaPredicted RBP7.24□□□□□ -1.25
CD44-237ENST00000534082 SLC32A1Q9H598 525 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 ADAM28Q9UKQ2 775 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 PCDHB15Q9Y5E8 787 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 ACACAQ13085 2346 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 NCANO14594 1321 aa7.24□□□□□ -1.25
CD44-237ENST00000534082 SF3B1O75533 1304 aaKnown RBP eCLIP7.24□□□□□ -1.25
CD44-237ENST00000534082 SPTA1P02549 2419 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 ERICH2A1L162 156 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 BCLAF3A2AJT9 711 aaKnown RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 H0Y626 953 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 IPO5O00410 1097 aaKnown RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 KHNYNO15037 678 aaKnown RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 ADAM12O43184 909 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 TRIM16O95361 564 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 PLEKHA8P1O95397 391 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 ITGA4P13612 1032 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 ZNF76P36508 570 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 KPNA1P52294 538 aaPredicted RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 CDC42EP1Q00587 391 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 TXNDC11Q6PKC3 985 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 NIPA1Q7RTP0 329 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 PLA2G4DQ86XP0 818 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 RHPN2Q8IUC4 686 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 CHCHD4Q8N4Q1 142 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 SMG8Q8ND04 991 aaKnown RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 CTCFLQ8NI51 663 aaPredicted RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 SNIP1Q8TAD8 396 aaKnown RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 CSGALNACT1Q8TDX6 532 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 RABGGTAQ92696 567 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 ZFP42Q96MM3 310 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 ASB16Q96NS5 453 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 APOL6Q9BWW8 343 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 ANO3Q9BYT9 981 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 CCDC86Q9H6F5 360 aaKnown RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 UBN1Q9NPG3 1134 aa7.23□□□□□ -1.25
CD44-237ENST00000534082 AVENQ9NQS1 362 aaPredicted RBP7.23□□□□□ -1.25
CD44-237ENST00000534082 RAXQ9Y2V3 346 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms