RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MYCLP12524 364 aaPredicted RBP20.57■□□□□ 0.88
VPS28-213ENST00000530983 UNGP13051 313 aaPredicted RBP20.57■□□□□ 0.88
VPS28-213ENST00000530983 KRT5P13647 590 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 JAK3P52333 1124 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 SOX10P56693 466 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 NEDD9Q14511 834 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 AEBP2Q6ZN18 517 aaPredicted RBP20.57■□□□□ 0.88
VPS28-213ENST00000530983 TAX1BP1Q86VP1 789 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 FAM84AQ96KN4 292 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 ELAC2Q9BQ52 826 aaKnown RBP20.57■□□□□ 0.88
VPS28-213ENST00000530983 KMT5AQ9NQR1 393 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 MROH7Q68CQ1 1323 aa20.57■□□□□ 0.88
VPS28-213ENST00000530983 GTF2H1P32780 548 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 DGKZQ13574 1117 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 FKBP1CQ5VVH2 108 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 PARP9Q8IXQ6 854 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 GIMAP7Q8NHV1 300 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 SLC38A10Q9HBR0 1119 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 SAMD15Q9P1V8 674 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 ASIC3Q9UHC3 531 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 COL4A5P29400 1685 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 ARID2Q68CP9 1835 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 VIMP08670 466 aaKnown RBP20.56■□□□□ 0.88
VPS28-213ENST00000530983 ITIH2P19823 946 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 SCP2P22307 547 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 SFNP31947 248 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 GCNT1Q02742 428 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 MCOLN2Q8IZK6 566 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 POMGNT1Q8WZA1 660 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 ADGRA3Q8IWK6 1321 aa20.56■□□□□ 0.88
VPS28-213ENST00000530983 FER1L6Q2WGJ9 1857 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 WDR46O15213 610 aaKnown RBP20.55■□□□□ 0.88
VPS28-213ENST00000530983 KRT76Q01546 638 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 PTK6Q13882 451 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 WLSQ5T9L3 541 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 SNF8Q96H20 258 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 PDCD2LQ9BRP1 358 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 NTPCRQ9BSD7 190 aaKnown RBP20.55■□□□□ 0.88
VPS28-213ENST00000530983 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.55■□□□□ 0.882e-7■■■■□ 26
VPS28-213ENST00000530983 TCEAL9Q9UHQ7 104 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 SLC12A4Q9UP95 1085 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 MYPNQ86TC9 1320 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 CREB1P16220 341 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 RRM1P23921 792 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 LLGL2Q6P1M3 1020 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 OTUD6AQ7L8S5 288 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 FAM83AQ86UY5 434 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 SERPINB12Q96P63 405 aa20.55■□□□□ 0.88
VPS28-213ENST00000530983 AVENQ9NQS1 362 aaPredicted RBP20.55■□□□□ 0.88
VPS28-213ENST00000530983 MAP3K10Q02779 954 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 PHLDB2Q86SQ0 1253 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 FAM228AQ86W67 206 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 SPIRE2Q8WWL2 714 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 CPA5Q8WXQ8 436 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 ARHGEF2Q92974 986 aaKnown RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 DDX27Q96GQ7 796 aaKnown RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 RMDN3Q96TC7 470 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 HOMER3Q9NSC5 361 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 MAP3K20Q9NYL2 800 aaKnown RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 TESPA1A2RU30 521 aaPredicted RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 KIF1CO43896 1103 aaKnown RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 ELF1P32519 619 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 ITGA8P53708 1063 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 LRRC14Q15048 493 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 TRIP13Q15645 432 aaPredicted RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 SNCBQ16143 134 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 VSTM1Q6UX27 236 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 USP37Q86T82 979 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 GPD1LQ8N335 351 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 DCLK3Q9C098 648 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 PXMP2Q9NR77 195 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 CTNNAL1Q9UBT7 734 aa20.54■□□□□ 0.88
VPS28-213ENST00000530983 R3HDM2Q9Y2K5 976 aaKnown RBP20.54■□□□□ 0.88
VPS28-213ENST00000530983 TTC4O95801 387 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 C2CD6Q53TS8 623 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 DAB2IPQ5VWQ8 1189 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 SYDE1Q6ZW31 735 aaPredicted RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 ENOSF1Q7L5Y1 443 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 DNAJC17Q9NVM6 304 aaKnown RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 TPX2Q9ULW0 747 aaKnown RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 TMEM120BA0PK00 339 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 HNRNPDLO14979 420 aaKnown RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 C15orf39Q6ZRI6 1047 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 TRPM8Q7Z2W7 1104 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 ZNF516Q92618 1163 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 LPAR1Q92633 364 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 FAM81BQ96LP2 452 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 FAM213AQ9BRX8 229 aa20.53■□□□□ 0.88
VPS28-213ENST00000530983 MOV10L1Q9BXT6 1211 aaKnown RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 NSRP1Q9H0G5 558 aaKnown RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 SCAF8Q9UPN6 1271 aaKnown RBP20.53■□□□□ 0.88
VPS28-213ENST00000530983 KIAA1217Q5T5P2 1943 aa20.52■□□□□ 0.88
VPS28-213ENST00000530983 O00370 1275 aa20.52■□□□□ 0.88
VPS28-213ENST00000530983 ZNF862O60290 1169 aa20.52■□□□□ 0.88
VPS28-213ENST00000530983 SNX3O60493 162 aa20.52■□□□□ 0.88
VPS28-213ENST00000530983 ZC3H11AO75152 810 aaKnown RBP eCLIP20.52■□□□□ 0.887e-6■■■■■ 33.7
VPS28-213ENST00000530983 OAS1P00973 400 aaKnown RBP20.52■□□□□ 0.88
VPS28-213ENST00000530983 GSTA1P08263 222 aa20.52■□□□□ 0.88
VPS28-213ENST00000530983 MAN1A1P33908 653 aa20.52■□□□□ 0.88
VPS28-213ENST00000530983 SLC1A1P43005 524 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms