RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PYGMP11217 842 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 EPHB2P29323 1055 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 STX2P32856 288 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 PTDSS1P48651 473 aaKnown RBP15.15■□□□□ 0.02
USP48-213ENST00000529637 BFSP1Q12934 665 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 KYNUQ16719 465 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 NBPF20Q3BBV1 942 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 ZNF449Q6P9G9 518 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 TRIM7Q9C029 511 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 KIAA1683Q9H0B3 1180 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 PCYOX1Q9UHG3 505 aa15.15■□□□□ 0.02
USP48-213ENST00000529637 GTPBP10A4D1E9 387 aaKnown RBP15.14■□□□□ 0.01
USP48-213ENST00000529637 LRRD1A4D1F6 860 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 GOLGA8IPA6NC78 632 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 GOLGA8JA6NMD2 632 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 CHRNB2P17787 502 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 CHRNA3P32297 505 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 PEX5P50542 639 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 PPP2R5CQ13362 524 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 ZNF568Q3ZCX4 644 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 PAIP2Q9BPZ3 127 aaKnown RBP15.14■□□□□ 0.01
USP48-213ENST00000529637 GPR88Q9GZN0 384 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 TMEM39BQ9GZU3 492 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 CYP39A1Q9NYL5 469 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 LARSQ9P2J5 1176 aaKnown RBP15.14■□□□□ 0.01
USP48-213ENST00000529637 HERC5Q9UII4 1024 aaKnown RBP15.14■□□□□ 0.01
USP48-213ENST00000529637 CHKBQ9Y259 395 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 TMX2Q9Y320 296 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 C10orf71Q711Q0 1435 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 TMEM150BA6NC51 233 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 TAC1P20366 129 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 ATP6V1C1P21283 382 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 CTNNA2P26232 953 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 DLG4P78352 724 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 GRIPAP1Q4V328 841 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 VSIG1Q86XK7 387 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 SRRM1Q8IYB3 904 aaKnown RBP15.14■□□□□ 0.01
USP48-213ENST00000529637 TEX9Q8N6V9 391 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 FBF1Q8TES7 1133 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 SLC20A1Q8WUM9 679 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 SYT11Q9BT88 431 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 DLGAP2Q9P1A6 1054 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 SEL1LQ9UBV2 794 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 FRMPD4Q14CM0 1322 aa15.14■□□□□ 0.01
USP48-213ENST00000529637 CBX6O95503 412 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 BCRP11274 1271 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 ALAS1P13196 640 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 GBP1P32455 592 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 SESN3P58005 492 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 CCDC127Q96BQ5 260 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 BTBD6Q96KE9 485 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 SLCO1B3Q9NPD5 702 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 PODXLO00592 558 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 ATMINO43313 823 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 T-ENOLP0DO92 83 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 MTFR1Q15390 333 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 TRIP13Q15645 432 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 PPP2R5EQ16537 467 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 RNF43Q68DV7 783 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 PHLDB3Q6NSJ2 640 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 BORCS6Q96GS4 357 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 CBWD1Q9BRT8 395 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 MKNK1Q9BUB5 465 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 TBC1D10AQ9BXI6 508 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 PITPNM3Q9BZ71 974 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 DIS3Q9Y2L1 958 aaKnown RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 YDJCA8MPS7 323 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 WFS1O76024 890 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 RTN3O95197 1032 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 MYCLP12524 364 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 COILP38432 576 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 PPM1KQ8N3J5 372 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 LARGE2Q8N3Y3 721 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 SLC7A6OSQ96CW6 309 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 IRAK4Q9NWZ3 460 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 ASB3Q9Y575 518 aa15.13■□□□□ 0.01
USP48-213ENST00000529637 CTDP1Q9Y5B0 961 aaPredicted RBP15.13■□□□□ 0.01
USP48-213ENST00000529637 SP100P23497 879 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 ANXA13P27216 316 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 MESDQ14696 234 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 SCN9AQ15858 1988 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 ASAP3Q8TDY4 903 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 MOV10L1Q9BXT6 1211 aaKnown RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 ROPN1BQ9BZX4 212 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 LRMDAQ9H2I8 198 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 DENND2DQ9H6A0 471 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 ROPN1Q9HAT0 212 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 ZNF70Q9UC06 446 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 ANKRD31Q8N7Z5 1873 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 FTLP02792 175 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 COMTP21964 271 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 DNAJC3Q13217 504 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 TMEM63BQ5T3F8 832 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 FOXB2Q5VYV0 432 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 ELMO3Q96BJ8 720 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 RAB3IPQ96QF0 476 aaPredicted RBP15.12■□□□□ 0.01
USP48-213ENST00000529637 KCNH7Q9NS40 1196 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 LTBP1Q14766 1721 aa15.12■□□□□ 0.01
USP48-213ENST00000529637 VIL1P09327 827 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 EIF2AK2P19525 551 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms