RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 TMEM60Q9H2L4 133 aa11.64□□□□□ -0.55
CPSF1-203ENST00000527916 XPNPEP1Q9NQW7 623 aa11.64□□□□□ -0.55
CPSF1-203ENST00000527916 FBXW11Q9UKB1 542 aa11.64□□□□□ -0.55
CPSF1-203ENST00000527916 KCNH3Q9ULD8 1083 aa11.64□□□□□ -0.55
CPSF1-203ENST00000527916 GIT1Q9Y2X7 761 aa11.64□□□□□ -0.55
CPSF1-203ENST00000527916 ZZEF1O43149 2961 aa11.64□□□□□ -0.55
CPSF1-203ENST00000527916 SF3B1O75533 1304 aaKnown RBP eCLIP11.63□□□□□ -0.55
CPSF1-203ENST00000527916 F8W810 466 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 MAN2B1O00754 1011 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 CCL16O15467 120 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 ECI2O75521 394 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 SPATA31C1P0DKV0 1188 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 U2AF2P26368 475 aaKnown RBP eCLIP11.63□□□□□ -0.55
CPSF1-203ENST00000527916 RPA1P27694 616 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 ARL2P36404 184 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 TFDP1Q14186 410 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 LPAL2Q16609 132 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 IL31Q6EBC2 164 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 PDXDC1Q6P996 788 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 MAMSTRQ6ZN01 415 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 CATSPER3Q86XQ3 398 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 NOSTRINQ8IVI9 506 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 NACC1Q96RE7 527 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 MINDY3Q9H8M7 445 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 SEMA4GQ9NTN9 838 aa11.63□□□□□ -0.55
CPSF1-203ENST00000527916 DAXXQ9UER7 740 aaPredicted RBP11.63□□□□□ -0.55
CPSF1-203ENST00000527916 ZFYVE26Q68DK2 2539 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 ASPMQ8IZT6 3477 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 SDK1Q7Z5N4 2213 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 POU2F2P09086 479 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 OR52Z1P0C646 297 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 ATP2B1P20020 1258 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 CCR3P51677 355 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 GRIK3Q13003 919 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 PDIA5Q14554 519 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 ZNF174Q15697 407 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 CSRP2Q16527 193 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 UVSSAQ2YD98 709 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 PABPC1LQ4VXU2 614 aaKnown RBP11.62□□□□□ -0.55
CPSF1-203ENST00000527916 TTC38Q5R3I4 469 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 PRSS55Q6UWB4 352 aaPredicted RBP11.62□□□□□ -0.55
CPSF1-203ENST00000527916 PRR23CQ6ZRP0 262 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 RTL10Q7L3V2 364 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 NPAS3Q8IXF0 933 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 C4orf32Q8N8J7 132 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 ITFG1Q8TB96 612 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 PIGOQ8TEQ8 1089 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 DNASE1L2Q92874 299 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 TTPALQ9BTX7 342 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 APOL6Q9BWW8 343 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 EIF2AQ9BY44 585 aaKnown RBP11.62□□□□□ -0.55
CPSF1-203ENST00000527916 CSRNP2Q9H175 543 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 RNF39Q9H2S5 420 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 CHRDQ9H2X0 955 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 HEBP1Q9NRV9 189 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 GDE1Q9NZC3 331 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 NOL7Q9UMY1 257 aaKnown RBP11.62□□□□□ -0.55
CPSF1-203ENST00000527916 MRPS23Q9Y3D9 190 aaKnown RBP11.62□□□□□ -0.55
CPSF1-203ENST00000527916 KIF3AQ9Y496 699 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 HES2Q9Y543 173 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 STK24Q9Y6E0 443 aa11.62□□□□□ -0.55
CPSF1-203ENST00000527916 MED24O75448 989 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 MCM2P49736 904 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 FXR2P51116 673 aaKnown RBP eCLIP11.61□□□□□ -0.552e-6■■□□□ 13.9
CPSF1-203ENST00000527916 FZD5Q13467 585 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 GNL2Q13823 731 aaKnown RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 CAPSQ13938 189 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 SIM2Q14190 667 aaPredicted RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 HSP90AA2PQ14568 343 aaPredicted RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 PSMD5Q16401 504 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 RTP2Q5QGT7 225 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 AXDND1Q5T1B0 1012 aaPredicted RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 CEP57Q86XR8 500 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 MCPH1Q8NEM0 835 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 ERMNQ8TAM6 284 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 SLC7A14Q8TBB6 771 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 PIK3R5Q8WYR1 880 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 CCDC43Q96MW1 224 aaKnown RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 CLSTN3Q9BQT9 956 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 UPF2Q9HAU5 1272 aaKnown RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 BMP2KQ9NSY1 1161 aaPredicted RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 MIOSQ9NXC5 875 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 NDRG2Q9UN36 371 aaKnown RBP11.61□□□□□ -0.55
CPSF1-203ENST00000527916 COL4A3Q01955 1670 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 PKD1L2Q7Z442 2459 aa11.61□□□□□ -0.55
CPSF1-203ENST00000527916 LAMA1P25391 3075 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 ZMYM2Q9UBW7 1377 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 INO80B-WBP1J3KQ70 363 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 LAD1O00515 517 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 TSPAN1O60635 241 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 TDGF1P13385 188 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 GLRA2P23416 452 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 CNR2P34972 360 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 TOB1P50616 345 aaPredicted RBP11.6□□□□□ -0.55
CPSF1-203ENST00000527916 SHC2P98077 582 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 MBTD1Q05BQ5 628 aa11.6□□□□□ -0.55
CPSF1-203ENST00000527916 ELAVL2Q12926 359 aaKnown RBP11.6□□□□□ -0.55
CPSF1-203ENST00000527916 COL9A2Q14055 689 aaPredicted RBP11.6□□□□□ -0.55
CPSF1-203ENST00000527916 AMHR2Q16671 573 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms