RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 ZC3H11AO75152 810 aaKnown RBP eCLIP22.53■■□□□ 1.2
CD44-222ENST00000526025 GALTP07902 379 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 CTNNB1P35222 781 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 BCAR1P56945 870 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 PAK1Q13153 545 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 CBWD2Q8IUF1 395 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 MFSD14AQ96MC6 490 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 MKNK1Q9BUB5 465 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 HCSTQ9UBK5 93 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 STK39Q9UEW8 545 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 UBQLN1Q9UMX0 589 aaKnown RBP22.53■■□□□ 1.2
CD44-222ENST00000526025 FRMD4BQ9Y2L6 1034 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 CHD7Q9P2D1 2997 aa22.53■■□□□ 1.2
CD44-222ENST00000526025 B4GALT3O60512 393 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 ALDH2P05091 517 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 FKBP3Q00688 224 aaKnown RBP22.52■■□□□ 1.2
CD44-222ENST00000526025 PLCB3Q01970 1234 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 CYP24A1Q07973 514 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 ADAM9Q13443 819 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 GLRA4Q5JXX5 417 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 ANKRD40Q6AI12 368 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 CAVIN1Q6NZI2 390 aaKnown RBP22.52■■□□□ 1.2
CD44-222ENST00000526025 SLC39A11Q8N1S5 342 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 FBXO22Q8NEZ5 403 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 NELFBQ8WX92 580 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 DDX27Q96GQ7 796 aaKnown RBP22.52■■□□□ 1.2
CD44-222ENST00000526025 DNAJB4Q9UDY4 337 aa22.52■■□□□ 1.2
CD44-222ENST00000526025 H3BNC9 293 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 CETN3O15182 167 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 LETM1O95202 739 aaPredicted RBP22.51■■□□□ 1.19
CD44-222ENST00000526025 RPL9P32969 192 aaKnown RBP22.51■■□□□ 1.19
CD44-222ENST00000526025 SLC11A1P49279 550 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 MCCD1P59942 119 aaPredicted RBP22.51■■□□□ 1.19
CD44-222ENST00000526025 UBE3AQ05086 875 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 TMEM132DQ14C87 1099 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 PSMD6Q15008 389 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 TTI2Q6NXR4 508 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 KIF12Q96FN5 646 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 SPG21Q9NZD8 308 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 RWDD2AQ9UIY3 292 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 LZTS1Q9Y250 596 aa22.51■■□□□ 1.19
CD44-222ENST00000526025 TRANK1O15050 2925 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 TMEM189-UBE2V1I3L0A0 370 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 LRPAP1P30533 357 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 PMS1P54277 932 aaKnown RBP22.5■■□□□ 1.19
CD44-222ENST00000526025 NFKBIBQ15653 356 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 DPCR1Q3MIW9 517 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 SPATA1Q5VX52 437 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 JADE1Q6IE81 842 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 KLHL10Q6JEL2 608 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 SASS6Q6UVJ0 657 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 SPRED2Q7Z698 418 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 ARNTL2Q8WYA1 636 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 CEP63Q96MT8 703 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 COLEC11Q9BWP8 271 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 CTNND2Q9UQB3 1225 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 FAN1Q9Y2M0 1017 aa22.5■■□□□ 1.19
CD44-222ENST00000526025 NRP1O14786 923 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 SLC16A3O15427 465 aaKnown RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 NFICP08651 508 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 ERCC5P28715 1186 aaPredicted RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 PSMC2P35998 433 aaKnown RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 CLDN10P78369 228 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 SOX4Q06945 474 aaPredicted RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 UPP1Q16831 310 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 INTS8Q75QN2 995 aaKnown RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 USP37Q86T82 979 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 WDR49Q8IV35 697 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 EFCAB13Q8IY85 973 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 KLHL23Q8NBE8 558 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 BEST2Q8NFU1 509 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 NOC3LQ8WTT2 800 aaKnown RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 CACTINQ8WUQ7 758 aaKnown RBP22.49■■□□□ 1.19
CD44-222ENST00000526025 FAM212AQ96EL1 285 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 IGSF21Q96ID5 467 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 LMAN2LQ9H0V9 348 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 ANO10Q9NW15 660 aa22.49■■□□□ 1.19
CD44-222ENST00000526025 TRIM49BA6NDI0 452 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 AKAP3O75969 853 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 FGF18O76093 207 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 PAX3P23760 479 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 OR1G1P47890 313 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 CASP4P49662 377 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 KRT17Q04695 432 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 CEP135Q66GS9 1140 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 RDH13Q8NBN7 331 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 TMC2Q8TDI7 906 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 C18orf25Q96B23 403 aaPredicted RBP22.48■■□□□ 1.19
CD44-222ENST00000526025 TMEM169Q96HH4 297 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 CGRRF1Q99675 332 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 DUSP9Q99956 384 aaKnown RBP22.48■■□□□ 1.19
CD44-222ENST00000526025 PDE11AQ9HCR9 933 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 MARCH5Q9NX47 278 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 MTUS1Q9ULD2 1270 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 ATG2AQ2TAZ0 1938 aa22.48■■□□□ 1.19
CD44-222ENST00000526025 EFEMP2O95967 443 aa22.47■■□□□ 1.19
CD44-222ENST00000526025 ITGB1P05556 798 aa22.47■■□□□ 1.19
CD44-222ENST00000526025 AP3M2P53677 418 aa22.47■■□□□ 1.19
CD44-222ENST00000526025 WNT7BP56706 349 aa22.47■■□□□ 1.19
CD44-222ENST00000526025 GPM6BQ13491 265 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms