RNA–Protein interactions for RNA: ENST00000522012.5

R3HCC1-208, Transcript of R3H domain and coiled-coil containing 1, humanhuman

TSL 1 (best)

Gene R3HCC1, Length 1,500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-208ENST00000522012 PRDM5Q9NQX1 630 aaPredicted RBP23.1■■□□□ 1.29
R3HCC1-208ENST00000522012 PDE4DIPQ5VU43 2346 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 AKR1B15C9JRZ8 316 aaPredicted RBP23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 PARNO95453 639 aaKnown RBP23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 FXR1P51114 621 aaKnown RBP eCLIP23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 ADKP55263 362 aaKnown RBP23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 ARID5BQ14865 1188 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 TMEM132DQ14C87 1099 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 PLEKHG4Q58EX7 1191 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 FIGNQ5HY92 759 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 UBE2Q1Q7Z7E8 422 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 RNF169Q8NCN4 708 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 DBF4BQ8NFT6 615 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 LMO3Q8TAP4 145 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 CACTINQ8WUQ7 758 aaKnown RBP23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 SEMA4DQ92854 862 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 IQCDQ96DY2 449 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 KIF12Q96FN5 646 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 FTHL17Q9BXU8 183 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 PLCB1Q9NQ66 1216 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 RAB20Q9NX57 234 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 COQ4Q9Y3A0 265 aa23.09■■□□□ 1.29
R3HCC1-208ENST00000522012 A0A0U1RQF3 1178 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 LRRN2O75325 713 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 NOL4O94818 638 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 SKIP12755 728 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 PIK3CAP42336 1068 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 POLR2FP61218 127 aaKnown RBP23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 LRMPQ12912 555 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 KLHDC7AQ5VTJ3 777 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 TRAPPC11Q7Z392 1133 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 MRPL10Q7Z7H8 261 aaKnown RBP23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 RTN4RL1Q86UN2 441 aaPredicted RBP23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 TTYH3Q9C0H2 523 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 CXCL16Q9H2A7 254 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 SIX2Q9NPC8 291 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 RGS18Q9NS28 235 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 CAPN11Q9UMQ6 739 aa23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 LUC7L2Q9Y383 392 aaKnown RBP23.08■■□□□ 1.29
R3HCC1-208ENST00000522012 RNF225M0QZC1 329 aaPredicted RBP23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 ZNF623O75123 536 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 HLA-DRAP01903 254 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 DPY19L2P1Q6NXN4 242 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 ALKAL1Q6UXT8 129 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 CACNA2D4Q7Z3S7 1137 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 DEFB128Q7Z7B8 93 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 LPPQ93052 612 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 GANQ9H2C0 597 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 RNF19AQ9NV58 838 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 CNTN3Q9P232 1028 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 C2CD2Q9Y426 696 aa23.08■■□□□ 1.28
R3HCC1-208ENST00000522012 A0A1W2PQJ5 194 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 VNN1O95497 513 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 GLRA4Q5JXX5 417 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 SLC24A5Q71RS6 500 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 CCDC150Q8NCX0 1101 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 ZNF397Q8NF99 534 aaPredicted RBP23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 APBB2Q92870 758 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 PGBD4Q96DM1 585 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 NLRC4Q9NPP4 1024 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 CEP72Q9P209 647 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 DERAQ9Y315 318 aa23.07■■□□□ 1.28
R3HCC1-208ENST00000522012 DNAH12Q6ZR08 3092 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 TRIM43BA6NCK2 446 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 MEIS3P2A8K0S8 358 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 MFAP3LO75121 409 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 CLSTN1O94985 981 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 UCHL3P15374 230 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 KRT9P35527 623 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 TRPC3Q13507 836 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 NCOA4Q13772 614 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 GJB7Q6PEY0 223 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 ECHDC2Q86YB7 292 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 NT5DC4Q86YG4 428 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 CNGA4Q8IV77 575 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 TC2NQ8N9U0 490 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 LINC01599Q8WXQ3 324 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 TRIM43Q96BQ3 446 aaPredicted RBP23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 TRIM44Q96DX7 344 aaPredicted RBP23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 ZMAT2Q96NC0 199 aaKnown RBP23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 PI4K2AQ9BTU6 479 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 EDEM3Q9BZQ6 932 aa23.06■■□□□ 1.28
R3HCC1-208ENST00000522012 SMIM28A0A1B0GU29 152 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 KIAA0355O15063 1070 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 TIMP1P01033 207 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 CST3P01034 146 aaPredicted RBP23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 CXCL10P02778 98 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 RAG1P15918 1043 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 ZBED6P86452 979 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 WDR44Q5JSH3 913 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 AGMOQ6ZNB7 445 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 ELMO3Q96BJ8 720 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 TSPYL2Q9H2G4 693 aaPredicted RBP23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 C1orf112Q9NSG2 853 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 APEX2Q9UBZ4 518 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 GIT1Q9Y2X7 761 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 FHOD1Q9Y613 1164 aa23.05■■□□□ 1.28
R3HCC1-208ENST00000522012 C9IYK1 514 aa23.04■■□□□ 1.28
R3HCC1-208ENST00000522012 KRT19P08727 400 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms