RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 SCP2P22307 547 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 FGFR3P22607 806 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 GBP2P32456 591 aaPredicted RBP19.14■□□□□ 0.65
DDX41-217ENST00000515562 LONP1P36776 959 aaKnown RBP19.14■□□□□ 0.65
DDX41-217ENST00000515562 TDGQ13569 410 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 RASSF8Q8NHQ8 419 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 GOLGA2P5Q9HBQ8 144 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 CNTN3Q9P232 1028 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 IGSF9Q9P2J2 1179 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 EPS15L1Q9UBC2 864 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 ZDBF2Q9HCK1 2354 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 VPS37CA5D8V6 355 aaPredicted RBP19.13■□□□□ 0.65
DDX41-217ENST00000515562 HNRNPA1P09651 372 aaKnown RBP eCLIP19.13■□□□□ 0.65
DDX41-217ENST00000515562 HARSP12081 509 aaKnown RBP19.13■□□□□ 0.65
DDX41-217ENST00000515562 HOXA9P31269 272 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 PTPN5P54829 565 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 KCNN1Q92952 543 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 SMOC2Q9H3U7 446 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 KCNK12Q9HB15 430 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.13■□□□□ 0.65
DDX41-217ENST00000515562 MTRRQ9UBK8 725 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 WDFY4Q6ZS81 3184 aa19.13■□□□□ 0.65
DDX41-217ENST00000515562 CLDN3O15551 220 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 N4BP1O75113 896 aaKnown RBP19.12■□□□□ 0.65
DDX41-217ENST00000515562 AVPR2P30518 371 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 NUBP1P53384 320 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 VCPP55072 806 aaKnown RBP19.12■□□□□ 0.65
DDX41-217ENST00000515562 NCKAP1LP55160 1127 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 SOX4Q06945 474 aaPredicted RBP19.12■□□□□ 0.65
DDX41-217ENST00000515562 SF3A1Q15459 793 aaKnown RBP19.12■□□□□ 0.65
DDX41-217ENST00000515562 ARSHQ5FYA8 562 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 PPM1LQ5SGD2 360 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 IER5LQ5T953 404 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 ANKS3Q6ZW76 656 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 GPBP1Q86WP2 473 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 PRSS33Q8NF86 280 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 REEP2Q9BRK0 252 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 DUSP12Q9UNI6 340 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 BACE2Q9Y5Z0 518 aa19.12■□□□□ 0.65
DDX41-217ENST00000515562 NPHP3-ACAD11A0A0J9YXS1 232 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 PODXLO00592 558 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 PDGFBP01127 241 aaPredicted RBP19.11■□□□□ 0.65
DDX41-217ENST00000515562 C8AP07357 584 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 PLCG1P19174 1290 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 RPL9P32969 192 aaKnown RBP19.11■□□□□ 0.65
DDX41-217ENST00000515562 CACNB1Q02641 598 aaPredicted RBP19.11■□□□□ 0.65
DDX41-217ENST00000515562 MCL1Q07820 350 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 RAB33AQ14088 237 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 C3orf58Q8NDZ4 430 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 NXPE3Q969Y0 559 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 BICD1Q96G01 975 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 ZMAT2Q96NC0 199 aaKnown RBP19.11■□□□□ 0.65
DDX41-217ENST00000515562 MFSD1Q9H3U5 465 aa19.11■□□□□ 0.65
DDX41-217ENST00000515562 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.11■□□□□ 0.65
DDX41-217ENST00000515562 PDCD11Q14690 1871 aaKnown RBP19.11■□□□□ 0.65
DDX41-217ENST00000515562 ADAM12O43184 909 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 XYLBO75191 536 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 FAM13AO94988 1023 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 POU2F2P09086 479 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 TKTP29401 623 aaKnown RBP19.1■□□□□ 0.65
DDX41-217ENST00000515562 ABCD1P33897 745 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 OR1D2P34982 312 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 KYAT1Q16773 422 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 CD300LGQ6UXG3 332 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 RTL10Q7L3V2 364 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 GET4Q7L5D6 327 aaPredicted RBP19.1■□□□□ 0.65
DDX41-217ENST00000515562 HAUS6Q7Z4H7 955 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 RAD54LQ92698 747 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 ZBTB45Q96K62 511 aaPredicted RBP19.1■□□□□ 0.65
DDX41-217ENST00000515562 PARVGQ9HBI0 331 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 BLOC1S4Q9NUP1 217 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 NUB1Q9Y5A7 615 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 CDY1Q9Y6F8 540 aa19.1■□□□□ 0.65
DDX41-217ENST00000515562 ZFP37Q9Y6Q3 630 aaPredicted RBP19.1■□□□□ 0.65
DDX41-217ENST00000515562 K7ENM7 598 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 HNRNPDLO14979 420 aaKnown RBP19.09■□□□□ 0.65
DDX41-217ENST00000515562 SYN3O14994 580 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 TBCAO75347 108 aaKnown RBP19.09■□□□□ 0.65
DDX41-217ENST00000515562 KRT18P05783 430 aaKnown RBP19.09■□□□□ 0.65
DDX41-217ENST00000515562 MATR3P43243 847 aaKnown RBP eCLIP19.09■□□□□ 0.65
DDX41-217ENST00000515562 BRCC3P46736 316 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 LIG4P49917 911 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 ZNF131P52739 623 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 KARSQ15046 597 aaKnown RBP19.09■□□□□ 0.65
DDX41-217ENST00000515562 UVSSAQ2YD98 709 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 MYCT1Q8N699 235 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 SLC7A14Q8TBB6 771 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 MYADMQ96S97 322 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 CCSER1Q9C0I3 900 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 IRF2BPLQ9H1B7 796 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 PLEKHA5Q9HAU0 1116 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 DOCK8Q8NF50 2099 aa19.09■□□□□ 0.65
DDX41-217ENST00000515562 PIEZO1Q92508 2521 aa19.08■□□□□ 0.65
DDX41-217ENST00000515562 I3L4J1 428 aa19.08■□□□□ 0.64
DDX41-217ENST00000515562 MEFVO15553 781 aaPredicted RBP19.08■□□□□ 0.64
DDX41-217ENST00000515562 CLTAP09496 248 aa19.08■□□□□ 0.64
DDX41-217ENST00000515562 LAMP2P13473 410 aa19.08■□□□□ 0.64
DDX41-217ENST00000515562 FSHRP23945 695 aa19.08■□□□□ 0.64
DDX41-217ENST00000515562 IGFBP6P24592 240 aaPredicted RBP19.08■□□□□ 0.64
DDX41-217ENST00000515562 GRIN1Q05586 938 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms