RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 COG2Q14746 738 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 HDAC7Q8WUI4 952 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 RIT2Q99578 217 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 NEU2Q9Y3R4 380 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 WEE2P0C1S8 567 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 PSMC6P62333 389 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 RPS6P62753 249 aaKnown RBP13.41□□□□□ -0.26
USP53-209ENST00000514665 RAB44Q7Z6P3 723 aaPredicted RBP13.41□□□□□ -0.26
USP53-209ENST00000514665 CBWD1Q9BRT8 395 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 C2orf40Q9H1Z8 148 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 ARL2BPQ9Y2Y0 163 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 PPFIA2O75334 1257 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 PRKCBP05771 671 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 GLI1P08151 1106 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 MDM2Q00987 491 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 PLCB4Q15147 1175 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 PTGISQ16647 500 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 AP1ARQ63HQ0 302 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 LRRC31Q6UY01 552 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 TRMT10CQ7L0Y3 403 aaKnown RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 CBWD2Q8IUF1 395 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 KIF2BQ8N4N8 673 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ATG4AQ8WYN0 398 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 KIF12Q96FN5 646 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 DUSP9Q99956 384 aaKnown RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 RTFDC1Q9BY42 306 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 RAB6BQ9NRW1 208 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 BAG5Q9UL15 447 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 FRMPD1Q5SYB0 1578 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 SASH3O75995 380 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 FAM107AO95990 144 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 PDGFRAP16234 1089 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 RAD23BP54727 409 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 TBX2Q13207 712 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 GIT2Q14161 759 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 SEZ6Q53EL9 994 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 TAF1BQ53T94 588 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 TRIM67Q6ZTA4 783 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ZNF571Q7Z3V5 609 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 FAM151AQ8WW52 585 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ACSF2Q96CM8 615 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 VPS39Q96JC1 886 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 AGAP1Q9UPQ3 857 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 USP15Q9Y4E8 981 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 WDR46O15213 610 aaKnown RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 EIF3DO15371 548 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP53-209ENST00000514665 CSPG5O95196 566 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 TYK2P29597 1187 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ITGA8P53708 1063 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 PRKCEQ02156 737 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 TNFAIP2Q03169 654 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 NME3Q13232 169 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 SMTNL2Q2TAL5 461 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 FBXO25Q8TCJ0 367 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 DDX56Q9NY93 547 aaKnown RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 MARCOQ9UEW3 520 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 FAF1Q9UNN5 650 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 ANGPTL3Q9Y5C1 460 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ARP10275 920 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 RALAP11233 206 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 PMLP29590 882 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 AP1B1Q10567 949 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 NT5DC1Q5TFE4 455 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 KRT80Q6KB66 452 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 CYP2W1Q8TAV3 490 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ZNF526Q8TF50 670 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 TRIM56Q9BRZ2 755 aaKnown RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 POLR3CQ9BUI4 534 aaPredicted RBP13.4□□□□□ -0.26
USP53-209ENST00000514665 SIK2Q9H0K1 926 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 BFARQ9NZS9 450 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 MID2Q9UJV3 735 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 ZNRF3Q9ULT6 936 aa13.4□□□□□ -0.26
USP53-209ENST00000514665 AGLP35573 1532 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 POU5F1BQ06416 359 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 VPS72Q15906 364 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 SLC10A5Q5PT55 438 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 SCN4BQ8IWT1 228 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 PRMT6Q96LA8 375 aaPredicted RBP13.39□□□□□ -0.27
USP53-209ENST00000514665 SENP7Q9BQF6 1050 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 YIPF3Q9GZM5 350 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 KCND2Q9NZV8 630 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 CFAP73A6NFT4 308 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 CYTH3O43739 400 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 FDX1P10109 184 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 TTLL4Q14679 1199 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 AGBL2Q5U5Z8 902 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 PID1Q7Z2X4 250 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 SLC13A5Q86YT5 568 aaPredicted RBP13.39□□□□□ -0.27
USP53-209ENST00000514665 SDCCAG3Q96C92 435 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 ATG4CQ96DT6 458 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 TAAR1Q96RJ0 339 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 EFHD1Q9BUP0 239 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 CNTNAP4Q9C0A0 1308 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 SLC24A3Q9HC58 644 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 TMEM8AQ9HCN3 771 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 NPHS2Q9NP85 383 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 PREX1Q8TCU6 1659 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 KCNN4O15554 427 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 ZWINTO95229 277 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 EFNA5P52803 228 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms