RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 PTGDRQ13258 359 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 GAS6Q14393 721 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 AMHR2Q16671 573 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 TSGA10IPQ3SY00 556 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 FAM78AQ5JUQ0 283 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 DEPDC1BQ8WUY9 529 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 ASB16Q96NS5 453 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 SLKQ9H2G2 1235 aaPredicted RBP12.83□□□□□ -0.36
RNF4-216ENST00000511859 SH3GLB2Q9NR46 395 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 MTRRQ9UBK8 725 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 BACE2Q9Y5Z0 518 aa12.83□□□□□ -0.36
RNF4-216ENST00000511859 DSPP15924 2871 aaKnown RBP12.83□□□□□ -0.36
RNF4-216ENST00000511859 PDCD11Q14690 1871 aaKnown RBP12.83□□□□□ -0.36
RNF4-216ENST00000511859 CASTOR2A6NHX0 329 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 C1QTNF9BB2RNN3 333 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 ZNF263O14978 683 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 AXIN1O15169 862 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 NPTXRO95502 500 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 TDP2O95551 362 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 LRG1P02750 347 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 HMGB1P09429 215 aaKnown RBP12.82□□□□□ -0.36
RNF4-216ENST00000511859 C1QTNF9P0C862 333 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 CEBPBP17676 345 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 CCNE1P24864 410 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 MBTD1Q05BQ5 628 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 SF3A2Q15428 464 aaKnown RBP12.82□□□□□ -0.36
RNF4-216ENST00000511859 XKR9Q5GH70 373 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 PRSS36Q5K4E3 855 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 DGKKQ5KSL6 1271 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 ZNF461Q8TAF7 563 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 FAM20AQ96MK3 541 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 RNF26Q9BY78 433 aaPredicted RBP12.82□□□□□ -0.36
RNF4-216ENST00000511859 ARRDC1-AS1Q9H2J1 176 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 CACNG4Q9UBN1 327 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 CDY1Q9Y6F8 540 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 TRIP11Q15643 1979 aa12.82□□□□□ -0.36
RNF4-216ENST00000511859 TMEM8BA6NDV4 472 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 SOBPA7XYQ1 873 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 FGFR3P22607 806 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 ELF1P32519 619 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 NLRP5P59047 1200 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 FGD1P98174 961 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 CYP4A22Q5TCH4 519 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 HEATR6Q6AI08 1181 aaKnown RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 ANKS3Q6ZW76 656 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 CACNA2D4Q7Z3S7 1137 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 WDR5BQ86VZ2 330 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 MFSD6LQ8IWD5 586 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 SMARCD2Q92925 531 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 E2F7Q96AV8 911 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 ESYT1Q9BSJ8 1104 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 C8orf33Q9H7E9 229 aaPredicted RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 TRPV4Q9HBA0 871 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 ANO2Q9NQ90 1003 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 BMP2KQ9NSY1 1161 aaPredicted RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 VPS54Q9P1Q0 977 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 WRAP73Q9P2S5 460 aaPredicted RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 DAXXQ9UER7 740 aaPredicted RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 DDX25Q9UHL0 483 aaKnown RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 COL4A2P08572 1712 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 WDR27A2RRH5 827 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 TRAPPC3O43617 180 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 ABLIM3O94929 683 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 EPN2O95208 641 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 RAP1GAPP47736 663 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 KRT32Q14532 448 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 EPHA7Q15375 998 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 VITQ6UXI7 678 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 PDZD4Q76G19 769 aaPredicted RBP12.81□□□□□ -0.36
RNF4-216ENST00000511859 SYNPOQ8N3V7 929 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 CSGALNACT1Q8TDX6 532 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 CORO1BQ9BR76 489 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 LXNQ9BS40 222 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 ZSWIM4Q9H7M6 989 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 RXFP3Q9NSD7 469 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 PCDHA4Q9UN74 947 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 PCDHGA5Q9Y5G8 931 aa12.81□□□□□ -0.36
RNF4-216ENST00000511859 LAMA5O15230 3695 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 ATG2BQ96BY7 2078 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 CCDC163A0A0D9SF12 145 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 PCNX2A6NKB5 2137 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 TMEM189-UBE2V1I3L0A0 370 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 PTGESO14684 152 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 B4GALT5O43286 388 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 ATF2P15336 505 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 RBM25P49756 843 aaKnown RBP12.8□□□□□ -0.36
RNF4-216ENST00000511859 NAB2Q15742 525 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 NTRK3Q16288 839 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 PLA2G2CQ5R387 149 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 PSAPL1Q6NUJ1 521 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 LRSAM1Q6UWE0 723 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 CDR2LQ86X02 465 aaPredicted RBP12.8□□□□□ -0.36
RNF4-216ENST00000511859 TCEAL8Q8IYN2 117 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 TCEAL4Q96EI5 215 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 PRIMPOLQ96LW4 560 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 GPR88Q9GZN0 384 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 XPNPEP1Q9NQW7 623 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 PPP4R2Q9NY27 417 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 VAV3Q9UKW4 847 aa12.8□□□□□ -0.36
RNF4-216ENST00000511859 NBEAQ8NFP9 2946 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms