RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ASNSP08243 561 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RARGP13631 454 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 FGFR4P22455 802 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 NPTX2P47972 431 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RWDD2BP57060 319 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MKRN3Q13064 507 aaKnown RBP17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ACAD10Q6JQN1 1059 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CYFIP1Q7L576 1253 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCDC105Q8IYK2 499 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ZNF784Q8NCA9 323 aaPredicted RBP17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 UHMK1Q8TAS1 419 aaKnown RBP17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 EPS8L3Q8TE67 593 aaKnown RBP17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 BSNDQ8WZ55 320 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MFSD14AQ96MC6 490 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 LRRC19Q9H756 370 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ANKEF1Q9NU02 776 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MTUS1Q9ULD2 1270 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PTPN22Q9Y2R2 807 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SMIM23A6NLE4 172 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 KIF3CO14782 793 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RGS16O15492 202 aaPredicted RBP17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 C6orf118Q5T5N4 469 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RNF207Q6ZRF8 634 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 FBXL18Q96ME1 805 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RUNDC3BQ96NL0 473 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 HOMER2Q9NSB8 354 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 EXOC7Q9UPT5 735 aa17.21■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 FSCN2O14926 492 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CTNND1O60716 968 aaKnown RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RASSF9O75901 435 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 AGTP01019 485 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CALCAP01258 141 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CDR1P51861 262 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SMTNP53814 917 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RPS6P62753 249 aaKnown RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ADCY2Q08462 1091 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ANKRD20A8PQ5CZ79 823 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GKAP1Q5VSY0 366 aaPredicted RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ANO5Q75V66 913 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CPLX4Q7Z7G2 160 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SLC17A8Q8NDX2 589 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 FBXL13Q8NEE6 735 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TMC2Q8TDI7 906 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 NT5C1BQ96P26 610 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SELENOSQ9BQE4 189 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ACTR5Q9H9F9 607 aaPredicted RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SLC38A10Q9HBR0 1119 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RAB20Q9NX57 234 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PASKQ96RG2 1323 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DENND3A2RUS2 1198 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 WDR46O15213 610 aaKnown RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CLDN3O15551 220 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PDE6CP51160 858 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 AUHQ13825 339 aaKnown RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SLMAPQ14BN4 828 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CLEC16AQ2KHT3 1053 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 LACTB2Q53H82 288 aaPredicted RBP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SLCO2A1Q92959 643 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 HVCN1Q96D96 273 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 AAASQ9NRG9 546 aa17.2■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 WDR64B1ANS9 1081 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TULP1O00294 542 aaPredicted RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 USP2O75604 605 aaPredicted RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MYCLP12524 364 aaPredicted RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MAP2K2P36507 400 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 JAK3P52333 1124 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 LLGL1Q15334 1064 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SV2AQ7L0J3 742 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCT6BQ92526 530 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 JPH2Q9BR39 696 aaPredicted RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PDCD2LQ9BRP1 358 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 MAP3K20Q9NYL2 800 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 OTOFQ9HC10 1997 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 DLATP10515 647 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SOX10P56693 466 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CYP24A1Q07973 514 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 C1orf54Q8WWF1 131 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 FAM84AQ96KN4 292 aa17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 NTPCRQ9BSD7 190 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ARID2Q68CP9 1835 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GOLGA6L7A0A1B0GV03 622 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CCDC189A1A4V9 331 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CELF2O95319 508 aaKnown RBP17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ECEL1O95672 775 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 UNGP13051 313 aaPredicted RBP17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SFNP31947 248 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 GTF2H1P32780 548 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SLCO1A2P46721 670 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 RHBDF2Q6PJF5 856 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CROCCP2Q86T23 111 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ZC3H15Q8WU90 426 aaKnown RBP17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 HERPUD2Q9BSE4 406 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 TRIM7Q9C029 511 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 SLC40A1Q9NP59 571 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 KMT5AQ9NQR1 393 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 PXMP2Q9NR77 195 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 ADGRA3Q8IWK6 1321 aa17.18■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 STBD1O95210 358 aa17.17■□□□□ 0.34
MSH5-SAPCD1-208ENST00000498473 CALRP27797 417 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms