RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 TOGARAM2Q6ZUX3 1019 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 ZNF677Q86XU0 584 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 RNF10Q8N5U6 811 aaKnown RBP9.1□□□□□ -0.95
SF3A1-210ENST00000498259 C16orf45Q96MC5 204 aaPredicted RBP9.1□□□□□ -0.95
SF3A1-210ENST00000498259 ALS2CR12Q96Q35 445 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 CHP1Q99653 195 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 MINDY3Q9H8M7 445 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 SIX2Q9NPC8 291 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 UBN1Q9NPG3 1134 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 STARD7Q9NQZ5 370 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 ITGA11Q9UKX5 1188 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 INTUQ9ULD6 942 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 FHOD1Q9Y613 1164 aa9.1□□□□□ -0.95
SF3A1-210ENST00000498259 MROH7Q68CQ1 1323 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 DOCK3Q8IZD9 2030 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 RNF225M0QZC1 329 aaPredicted RBP9.09□□□□□ -0.95
SF3A1-210ENST00000498259 DNM1LO00429 736 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 ABLIM1O14639 778 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 EPHB6O15197 1021 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 B4GALT5O43286 388 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 FAM189A1O60320 539 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 CD4P01730 458 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 HLA-DRAP01903 254 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 IQCF3P0C7M6 154 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PAX3P23760 479 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 CASQ1P31415 396 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 THPOP40225 353 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 USP8P40818 1118 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 RAB27AP51159 221 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PDE6CP51160 858 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 TUBB4BP68371 445 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 RBP5P82980 135 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 TMEM62Q0P6H9 643 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 BFSP2Q13515 415 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 ENOX2Q16206 610 aaKnown RBP9.09□□□□□ -0.95
SF3A1-210ENST00000498259 ARHGAP44Q17R89 818 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 C1orf220Q5T0J3 134 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 TWF2Q6IBS0 349 aaKnown RBP9.09□□□□□ -0.95
SF3A1-210ENST00000498259 RUFY4Q6ZNE9 571 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 NYAP1Q6ZVC0 841 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 TRAPPC11Q7Z392 1133 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 IRF2BP2Q7Z5L9 587 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 BEST2Q8NFU1 509 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 LMO3Q8TAP4 145 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 TAS1R2Q8TE23 839 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PPP1R16BQ96T49 567 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 POP1Q99575 1024 aaKnown RBP9.09□□□□□ -0.95
SF3A1-210ENST00000498259 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.09□□□□□ -0.95
SF3A1-210ENST00000498259 SLC38A7Q9NVC3 462 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 ARHGAP20Q9P2F6 1191 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PIN4Q9Y237 131 aaKnown RBP9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PTPN22Q9Y2R2 807 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PCDHB2Q9Y5E7 798 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 PCDHA13Q9Y5I0 950 aa9.09□□□□□ -0.95
SF3A1-210ENST00000498259 MYADML2A6NDP7 307 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TLR3O15455 904 aaKnown RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 EVI5O60447 810 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TACC1O75410 805 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PARNO95453 639 aaKnown RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 KRT5P13647 590 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PNPLA4P41247 253 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TNFSF9P41273 254 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TERF1P54274 439 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 NAP1L1P55209 391 aaKnown RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 OSTNP61366 133 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 GNG11P61952 73 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 NOP14P78316 857 aaKnown RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TRIM32Q13049 653 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 CUL2Q13617 745 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 NAB2Q15742 525 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 ZNF699Q32M78 642 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 ZNF667Q5HYK9 610 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TDRD10Q5VZ19 366 aaKnown RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 GDF6Q6KF10 455 aaPredicted RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TRIM72Q6ZMU5 477 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 REXO1L1PQ8IX06 675 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 FAM71AQ8IYT1 594 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TRIM58Q8NG06 486 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 CAGE1Q8TC20 777 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PLEKHO2Q8TD55 490 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 SHC3Q92529 594 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 ZNF592Q92610 1267 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 SECISBP2LQ93073 1101 aaKnown RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PGBD4Q96DM1 585 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 ZBTB10Q96DT7 871 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 TRIM11Q96F44 468 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 CPB2Q96IY4 423 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 ZNF668Q96K58 619 aaPredicted RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 DESI2Q9BSY9 194 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 HAPLN2Q9GZV7 340 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PDCL3Q9H2J4 239 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 CYP3A43Q9HB55 503 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 LZTFL1Q9NQ48 299 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 RRAGDQ9NQL2 400 aaPredicted RBP9.08□□□□□ -0.96
SF3A1-210ENST00000498259 ADAMTS1Q9UHI8 967 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PHF24Q9UPV7 400 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 CEP83Q9Y592 693 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 PTCH2Q9Y6C5 1203 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 CDY2AQ9Y6F7 541 aa9.08□□□□□ -0.96
SF3A1-210ENST00000498259 THSD7BQ9C0I4 1608 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms