RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CDC25CP30307 473 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 MRPS35P82673 323 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 PRKCEQ02156 737 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 GIT2Q14161 759 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 KLHDC7AQ5VTJ3 777 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 GRAMD1AQ96CP6 724 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 UBOX5O94941 541 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 ICAM1P05362 532 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 TXNP10599 105 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 SPDYE1Q8NFV5 336 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 PIP4K2CQ8TBX8 421 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 SCFD1Q8WVM8 642 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 MMP19Q99542 508 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 KDM4CQ9H3R0 1056 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 FAM53CQ9NYF3 392 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 MCF2LO15068 1137 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 CPP00450 1065 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 KCNK18Q7Z418 384 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 CCNYQ8ND76 341 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 CEP70Q8NHQ1 597 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 SLC35G2Q8TBE7 412 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 PPP4R1Q8TF05 950 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 MRPL4Q9BYD3 311 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 ADAM33Q9BZ11 813 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 AGPAT3Q9NRZ7 376 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 PPARGC1AQ9UBK2 798 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 C19orf81C9J6K1 198 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 AMPD2Q01433 879 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 GEN1Q17RS7 908 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 BBS9Q3SYG4 887 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 HSPH1Q92598 858 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 TTC17Q96AE7 1141 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 FAM161BQ96MY7 647 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 ERP44Q9BS26 406 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 TLR10Q9BXR5 811 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 PCSK1NQ9UHG2 260 aa17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 TTC7AQ9ULT0 858 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-209ENST00000494080 PPP6R3Q5H9R7 873 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 DARS2Q6PI48 645 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 JAMLQ86YT9 394 aa17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 TRIM59Q8IWR1 403 aa17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 C1orf54Q8WWF1 131 aa17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 ATP2A3Q93084 1043 aa17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 PABPN1LA6NDY0 278 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 PRPSAP2O60256 369 aa17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 TPD52P55327 224 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 PPP2R5CQ13362 524 aa17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 G3BP2Q9UN86 482 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-209ENST00000494080 FAM86B1E9PN63 330 aa17.27■□□□□ 0.35
CCDC88B-209ENST00000494080 FAM86B2P0C5J1 330 aa17.27■□□□□ 0.35
CCDC88B-209ENST00000494080 PHKA2P46019 1235 aa17.27■□□□□ 0.35
CCDC88B-209ENST00000494080 EPC2Q52LR7 807 aa17.27■□□□□ 0.35
CCDC88B-209ENST00000494080 KCND2Q9NZV8 630 aa17.27■□□□□ 0.35
CCDC88B-209ENST00000494080 GPC3P51654 580 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 TKFCQ3LXA3 575 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 NBPF12Q5TAG4 269 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 AGGF1Q8N302 714 aaeCLIP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 RBM46Q8TBY0 533 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 KAT2BQ92831 832 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 PI4K2AQ9BTU6 479 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 NVLO15381 856 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 PPP1R2P3Q6NXS1 205 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 MOV10L1Q9BXT6 1211 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 PACSIN1Q9BY11 444 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 LRRC4Q9HBW1 653 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 MAGED2Q9UNF1 606 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 KCNA3P22001 575 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 RFX1P22670 979 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 IFT122Q9HBG6 1241 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 SLC38A10Q9HBR0 1119 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 BLOC1S4Q9NUP1 217 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 BCAP29Q9UHQ4 241 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 GAKO14976 1311 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 CIITAP33076 1130 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 YTHDF3Q7Z739 585 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 TEX9Q8N6V9 391 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 AKT1S1Q96B36 256 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 FAM129AQ9BZQ8 928 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 C15orf41Q9Y2V0 281 aa17.26■□□□□ 0.35
CCDC88B-209ENST00000494080 SAT1P21673 171 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 FIGNQ5HY92 759 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 PABPC3Q9H361 631 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 ZFATQ9P243 1243 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 AKAP3O75969 853 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 SERPINB4P48594 390 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 DUOXA2Q1HG44 320 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 C1orf146Q5VVC0 180 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 MOXD1Q6UVY6 613 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 SH3RF1Q7Z6J0 888 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 DNAAF5Q86Y56 855 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 GMCL1P1Q8NEA9 526 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 DUSP9Q99956 384 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 CACNA1FO60840 1977 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 FAM237AA0A1B0GTK4 181 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 LRRC10BA6NIK2 292 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 EIF3DO15371 548 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 ATMINO43313 823 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 CDK17Q00537 523 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 SLC16A10Q8TF71 515 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms