RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SCN4AP35499 1836 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 TOM1L1O75674 476 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 FAM153BP0C7A2 387 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 SRGAP2CP0DJJ0 459 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 COMTP21964 271 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 ZNF211Q13398 564 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 CUL2Q13617 745 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 FAM153CQ494X1 144 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 RNF149Q8NC42 400 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 KRT35Q92764 455 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 ZSWIM1Q9BR11 485 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 UVRAGQ9P2Y5 699 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 FAM153AQ9UHL3 310 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 PCDHB2Q9Y5E7 798 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 RNF40O75150 1001 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 UNGP13051 313 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 CYP2C19P33261 490 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 TNFSF9P41273 254 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 ZNF677Q86XU0 584 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 ZBTB8OSQ8IWT0 167 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 RIN2Q8WYP3 895 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 EXOC4Q96A65 974 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 ACO2Q99798 780 aaKnown RBP22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 PNMA3Q9UL41 463 aa22.63■■□□□ 1.21
CCDC88B-208ENST00000492980 GLTPD2A6NH11 291 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 PRKCBP05771 671 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 MARCKSL1P49006 195 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 SLC26A2P50443 739 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 TTLL4Q14679 1199 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 ZBTB33Q86T24 672 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 UBL4BQ8N7F7 174 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 EIF1ADQ8N9N8 165 aaKnown RBP22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 TRAPPC12Q8WVT3 735 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 CD101Q93033 1021 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 SLC10A4Q96EP9 437 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 SMARCAD1Q9H4L7 1026 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 NR2E1Q9Y466 385 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 PLXNA1Q9UIW2 1896 aa22.62■■□□□ 1.21
CCDC88B-208ENST00000492980 ASB14A6NK59 587 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 BPIFB4P59827 614 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 BTBD6Q96KE9 485 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 NAP1L3Q99457 506 aaPredicted RBP22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 CNOT8Q9UFF9 292 aaKnown RBP22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 AMACRQ9UHK6 382 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 ABLIM1O14639 778 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 CLTAP09496 248 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 POU5F1Q01860 360 aaKnown RBP22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 MAPK6Q16659 721 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 NAA35Q5VZE5 725 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 ARMCX2Q7L311 632 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 WHAMMQ8TF30 809 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 GTF3C2Q8WUA4 911 aaPredicted RBP22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 WNT8AQ9H1J5 351 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 C2orf40Q9H1Z8 148 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 PLXNB2O15031 1838 aa22.61■■□□□ 1.21
CCDC88B-208ENST00000492980 UMODL1Q5DID0 1318 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 CLSTN1O94985 981 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 ECHS1P30084 290 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 PEX5P50542 639 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 NOP14P78316 857 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 GRM1Q13255 1194 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 CUL1Q13616 776 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 NCOA4Q13772 614 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 CLUL1Q15846 466 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 RHPN2Q8IUC4 686 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 MREGQ8N565 214 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 CCDC26Q8TAB7 109 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 JPH2Q9BR39 696 aaPredicted RBP22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 TCHPQ9BT92 498 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 NUB1Q9Y5A7 615 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 PTENP60484 403 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 MCL1Q07820 350 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 ALS2CLQ60I27 953 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 SCARA3Q6AZY7 606 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 AADACL2Q6P093 401 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 MAATS1Q7Z4T9 603 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 CPNE8Q86YQ8 564 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 WDR49Q8IV35 697 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 GPRC5AQ8NFJ5 357 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 PSD3Q9NYI0 1048 aa22.6■■□□□ 1.21
CCDC88B-208ENST00000492980 OGTO15294 1046 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 HBP1O60381 514 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 TBXAS1P24557 533 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 GUCY2FP51841 1108 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 AP3M2P53677 418 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 MCOLN2Q8IZK6 566 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 ERVK-5Q9HDB9 667 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 CNTN6Q9UQ52 1028 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 PCDHB4Q9Y5E5 795 aa22.59■■□□□ 1.21
CCDC88B-208ENST00000492980 TTI1O43156 1089 aa22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 CYP1A1P04798 512 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 GJB1P08034 283 aa22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 CTNNA2P26232 953 aa22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 CTNNA1P35221 906 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 ARHGAP1Q07960 439 aa22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 ZNF792Q3KQV3 632 aa22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 CPSF3Q9UKF6 684 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-208ENST00000492980 PROZP22891 400 aa22.58■■□□□ 1.2
CCDC88B-208ENST00000492980 CENPCQ03188 943 aa22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms