RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 PRSS36Q5K4E3 855 aa12.88□□□□□ -0.35
HDAC6-233ENST00000489352 UBXN11Q5T124 520 aa12.88□□□□□ -0.35
HDAC6-233ENST00000489352 POTEHQ6S545 545 aa12.88□□□□□ -0.35
HDAC6-233ENST00000489352 SMG8Q8ND04 991 aaKnown RBP12.88□□□□□ -0.35
HDAC6-233ENST00000489352 HHIPQ96QV1 700 aa12.88□□□□□ -0.35
HDAC6-233ENST00000489352 JPH2Q9BR39 696 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-233ENST00000489352 SENP2Q9HC62 589 aa12.88□□□□□ -0.35
HDAC6-233ENST00000489352 GIT1Q9Y2X7 761 aa12.88□□□□□ -0.35
HDAC6-233ENST00000489352 hCG_1642624A0A1W2PR95 340 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 ARNTLO00327 626 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 DPYSL4O14531 572 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 SRGAP2CP0DJJ0 459 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 SREBF1P36956 1147 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 ABCG1P45844 678 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 DGKEP52429 567 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 KCNC4Q03721 635 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 GRIK3Q13003 919 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 SEMA3BQ13214 749 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 USP39Q53GS9 565 aaKnown RBP12.87□□□□□ -0.35
HDAC6-233ENST00000489352 WDR44Q5JSH3 913 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 CWC27Q6UX04 472 aaKnown RBP12.87□□□□□ -0.35
HDAC6-233ENST00000489352 CCNI2Q6ZMN8 369 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-233ENST00000489352 SRGAP1Q7Z6B7 1085 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 RALYLQ86SE5 291 aaKnown RBP12.87□□□□□ -0.35
HDAC6-233ENST00000489352 PIP4P1Q86T03 277 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 ZNF843Q8N446 348 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 LSM14AQ8ND56 463 aaKnown RBP12.87□□□□□ -0.35
HDAC6-233ENST00000489352 ZSWIM3Q96MP5 696 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 MAP3K14Q99558 947 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 DSCC1Q9BVC3 393 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 GPR88Q9GZN0 384 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 RNF39Q9H2S5 420 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 DISC1Q9NRI5 854 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 INVSQ9Y283 1065 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 HES2Q9Y543 173 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 CDY1Q9Y6F8 540 aa12.87□□□□□ -0.35
HDAC6-233ENST00000489352 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 UPK3BL1B0FP48 263 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 UPK3BL2E5RIL1 263 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 FAM86B1E9PN63 330 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 NRG2O14511 850 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 FAM86B2P0C5J1 330 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 ENGP17813 658 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 HOXA11P31270 313 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 ADCY7P51828 1080 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 NAPAP54920 295 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 SETQ01105 290 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 PKN3Q6P5Z2 889 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 CMTR1Q8N1G2 835 aaKnown RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 CCDC82Q8N4S0 544 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 CRELD1Q96HD1 420 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 ZNF512Q96ME7 567 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 TMEM209Q96SK2 561 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 TRPV4Q9HBA0 871 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 IFT122Q9HBG6 1241 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 DIAPH3Q9NSV4 1193 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 GTSE1Q9NYZ3 720 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 EVLQ9UI08 416 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-233ENST00000489352 COL4A3BPQ9Y5P4 624 aa12.86□□□□□ -0.35
HDAC6-233ENST00000489352 PTPRBP23467 1997 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 OPHN1O60890 802 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 DDAH1O94760 285 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 PLEKHA8P1O95397 391 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 APBB3O95704 486 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 MYL4P12829 197 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 SDSP20132 328 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 AXLP30530 894 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 AP3B2Q13367 1082 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 TARBP2Q15633 366 aaKnown RBP12.85□□□□□ -0.35
HDAC6-233ENST00000489352 ARHGAP29Q52LW3 1261 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 PMS2CLQ68D20 193 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 NOTUMQ6P988 496 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-233ENST00000489352 TEX2Q8IWB9 1127 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 PLEKHM2Q8IWE5 1019 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 SRBD1Q8N5C6 995 aaKnown RBP12.85□□□□□ -0.35
HDAC6-233ENST00000489352 PIP4K2CQ8TBX8 421 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 GTPBP2Q9BX10 602 aaKnown RBP12.85□□□□□ -0.35
HDAC6-233ENST00000489352 EIF2AQ9BY44 585 aaKnown RBP12.85□□□□□ -0.35
HDAC6-233ENST00000489352 RIC8AQ9NPQ8 531 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 PARP2Q9UGN5 583 aa12.85□□□□□ -0.35
HDAC6-233ENST00000489352 ARHGEF37A1IGU5 675 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 DDX11L8A8MPP1 907 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 CHMP2AO43633 222 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 CALM1P0DP23 149 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 CALM2P0DP24 149 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 CALM3P0DP25 149 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 AKAP5P24588 427 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 SFNP31947 248 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 CCR2P41597 374 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 FAM193AP78312 1265 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 TUSC3Q13454 348 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 TRIP6Q15654 476 aaKnown RBP12.84□□□□□ -0.35
HDAC6-233ENST00000489352 MAPK6Q16659 721 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 XKR3Q5GH77 459 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 NFXL1Q6ZNB6 911 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 SCUBE3Q8IX30 993 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 ZNF654Q8IZM8 581 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 PNPLA1Q8N8W4 532 aa12.84□□□□□ -0.35
HDAC6-233ENST00000489352 LEMD2Q8NC56 503 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms