RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	FLCN	Q8NFG4	579 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	ATOH1	Q92858	354 aa	Predicted RBP	13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	NXPE3	Q969Y0	559 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	CALML4	Q96GE6	196 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	TBC1D32	Q96NH3	1257 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	GOLGA2P5	Q9HBQ8	144 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	POLI	Q9UNA4	740 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	DUSP12	Q9UNI6	340 aa		13.63	□□□□□ -0.23
SREBF1-215	ENST00000487401	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	STK25	O00506	426 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	PODXL	O00592	558 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	ADAM12	O43184	909 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	TOM1L1	O75674	476 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	C8A	P07357	584 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	MAPT	P10636	758 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	LAMP2	P13473	410 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	KCNE1	P15382	129 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	PROZ	P22891	400 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	RPL9	P32969	192 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	BRCC3	P46736	316 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	CLCN5	P51795	746 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	UVSSA	Q2YD98	709 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	TMEM119	Q4V9L6	283 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	ANKS3	Q6ZW76	656 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	TMEM161B	Q8NDZ6	487 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	RASSF8	Q8NHQ8	419 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	RSAD2	Q8WXG1	361 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	BICD1	Q96G01	975 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	ZBTB45	Q96K62	511 aa	Predicted RBP	13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	SNX27	Q96L92	541 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	LARS	Q9P2J5	1176 aa	Known RBP	13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	ANKFY1	Q9P2R3	1169 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	MTRR	Q9UBK8	725 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	NUB1	Q9Y5A7	615 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401	BACE2	Q9Y5Z0	518 aa		13.62	□□□□□ -0.23
SREBF1-215	ENST00000487401		I3L4J1	428 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	CCL16	O15467	120 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	CLDN3	O15551	220 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	GALR2	O43603	387 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	RFX1	P22670	979 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	IGFBP6	P24592	240 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	TKT	P29401	623 aa	Known RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	HOXA9	P31269	272 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	CACNB1	Q02641	598 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	SOX4	Q06945	474 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	DHX8	Q14562	1220 aa	Known RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	ARSH	Q5FYA8	562 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	CD300LG	Q6UXG3	332 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	ZPBP2	Q6X784	338 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	RTL10	Q7L3V2	364 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	BRAP	Q7Z569	592 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	GPBP1	Q86WP2	473 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	SIX5	Q8N196	739 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	SLC44A3	Q8N4M1	653 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	TMEM105	Q8N8V8	129 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	SLC7A14	Q8TBB6	771 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	ZMAT2	Q96NC0	199 aa	Known RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	CNTN3	Q9P232	1028 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	CDY1	Q9Y6F8	540 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	MUC6	Q6W4X9	2439 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	TECTA	O75443	2155 aa		13.61	□□□□□ -0.23
SREBF1-215	ENST00000487401	WDR81	Q562E7	1941 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401		H0Y858	1186 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401		H7C4K7	107 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	ABLIM1	O14639	778 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	NARS	O43776	548 aa	Known RBP	13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	FAM13A	O94988	1023 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	KRT18	P05783	430 aa	Known RBP	13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	CFH	P08603	1231 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	ELF1	P32519	619 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	LONP1	P36776	959 aa	Known RBP	13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	MCL1	Q07820	350 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	SEZ6	Q53EL9	994 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	MYCT1	Q8N699	235 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	C3orf58	Q8NDZ4	430 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	C18orf25	Q96B23	403 aa	Predicted RBP	13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	PHOX2B	Q99453	314 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	WNT16	Q9UBV4	365 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	CDH7	Q9ULB5	785 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	ODF2L	Q9ULJ1	636 aa		13.6	□□□□□ -0.23
SREBF1-215	ENST00000487401	VPS37C	A5D8V6	355 aa	Predicted RBP	13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	ANHX	E9PGG2	379 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	SYN3	O14994	580 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	POU2F2	P09086	479 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	CLTA	P09496	248 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	SRF	P11831	508 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	PDC	P20941	246 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	SCP2	P22307	547 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	MARCKS	P29966	332 aa	Predicted RBP	13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	LIG4	P49917	911 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	NCKAP1L	P55160	1127 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	ARPP19	P56211	112 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	NTHL1	P78549	312 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	SF3A1	Q15459	793 aa	Known RBP	13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	KYAT1	Q16773	422 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms