RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PRSS36Q5K4E3 855 aa16.98■□□□□ 0.31
MCF2L-228ENST00000487354 EEF1DP3Q658K8 133 aa16.98■□□□□ 0.31
MCF2L-228ENST00000487354 TANGO2Q6ICL3 276 aa16.98■□□□□ 0.31
MCF2L-228ENST00000487354 GPR161Q8N6U8 529 aaKnown RBP16.98■□□□□ 0.31
MCF2L-228ENST00000487354 DDX27Q96GQ7 796 aaKnown RBP16.98■□□□□ 0.31
MCF2L-228ENST00000487354 NAP1L4Q99733 375 aaKnown RBP16.98■□□□□ 0.31
MCF2L-228ENST00000487354 AVENQ9NQS1 362 aaPredicted RBP16.98■□□□□ 0.31
MCF2L-228ENST00000487354 PRMT7Q9NVM4 692 aaPredicted RBP16.98■□□□□ 0.31
MCF2L-228ENST00000487354 CDY1Q9Y6F8 540 aa16.98■□□□□ 0.31
MCF2L-228ENST00000487354 CITO14578 2027 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 NCANO14594 1321 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 DCDC2BA2VCK2 349 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 LRRIQ4A6NIV6 560 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 SPATA31C1P0DKV0 1188 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 TKTP29401 623 aaKnown RBP16.97■□□□□ 0.31
MCF2L-228ENST00000487354 ELAVL2Q12926 359 aaKnown RBP16.97■□□□□ 0.31
MCF2L-228ENST00000487354 NOSTRINQ8IVI9 506 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 MCRS1Q96EZ8 462 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 PPP1R10Q96QC0 940 aaKnown RBP16.97■□□□□ 0.31
MCF2L-228ENST00000487354 GDE1Q9NZC3 331 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 CYP46A1Q9Y6A2 500 aa16.97■□□□□ 0.31
MCF2L-228ENST00000487354 CHD6Q8TD26 2715 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 ARHGEF37A1IGU5 675 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 PRR5-ARHGAP8B1AHC4 643 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 TBC1D4O60343 1298 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 CCR2P41597 374 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 RBM25P49756 843 aaKnown RBP16.96■□□□□ 0.31
MCF2L-228ENST00000487354 ARHGAP8P85298 464 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 ADCY1Q08828 1119 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 PDXDC1Q6P996 788 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 ZNF852Q6ZMS4 543 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 MAEAQ7L5Y9 396 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 DNASE1L2Q92874 299 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 ELSPBP1Q96BH3 223 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 TCEAL4Q96EI5 215 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 MTMR9Q96QG7 549 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 NELL2Q99435 816 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 RTKNQ9BST9 563 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 TM6SF1Q9BZW5 370 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 CHRDQ9H2X0 955 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 CDV3Q9UKY7 258 aaKnown RBP16.96■□□□□ 0.31
MCF2L-228ENST00000487354 MRPS23Q9Y3D9 190 aaKnown RBP16.96■□□□□ 0.31
MCF2L-228ENST00000487354 BACE2Q9Y5Z0 518 aa16.96■□□□□ 0.31
MCF2L-228ENST00000487354 I3L4J1 428 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 N4BP3O15049 544 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 MARCH6O60337 910 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 ADRB1P08588 477 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 FDPSP14324 419 aaKnown RBP16.95■□□□□ 0.3
MCF2L-228ENST00000487354 SDHBP21912 280 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 CLCNKBP51801 687 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 SOX4Q06945 474 aaPredicted RBP16.95■□□□□ 0.3
MCF2L-228ENST00000487354 UPP1Q16831 310 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 GLRA4Q5JXX5 417 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 CPLX2Q6PUV4 134 aaKnown RBP16.95■□□□□ 0.3
MCF2L-228ENST00000487354 MAMSTRQ6ZN01 415 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 RTL10Q7L3V2 364 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 TTC12Q9H892 705 aaPredicted RBP16.95■□□□□ 0.3
MCF2L-228ENST00000487354 GOLGA2P5Q9HBQ8 144 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 USP18Q9UMW8 372 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 PCDHA12Q9UN75 941 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 GREB1Q4ZG55 1949 aa16.95■□□□□ 0.3
MCF2L-228ENST00000487354 WDR27A2RRH5 827 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 REC8O95072 547 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 BAG4O95429 457 aaKnown RBP16.94■□□□□ 0.3
MCF2L-228ENST00000487354 BRCC3P46736 316 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 ROR1Q01973 937 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 GRM2Q14416 872 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 CALCRLQ16602 461 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 FAM78AQ5JUQ0 283 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 SLC8B1Q6J4K2 584 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 FAM126AQ9BYI3 521 aaPredicted RBP16.94■□□□□ 0.3
MCF2L-228ENST00000487354 TPCN1Q9ULQ1 816 aa16.94■□□□□ 0.3
MCF2L-228ENST00000487354 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.94■□□□□ 0.3
MCF2L-228ENST00000487354 KIF26AQ9ULI4 1882 aaPredicted RBP16.94■□□□□ 0.3
MCF2L-228ENST00000487354 NUP210Q8TEM1 1887 aaPredicted RBP16.93■□□□□ 0.3
MCF2L-228ENST00000487354 ACKR2O00590 384 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 PFKFB2O60825 505 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 MOSPD3O75425 235 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 MED24O75448 989 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 B3GAT3O94766 335 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 ABLIM3O94929 683 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 PRKCBP05771 671 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 XRCC6P12956 609 aaKnown RBP eCLIP16.93■□□□□ 0.3
MCF2L-228ENST00000487354 SPEM2Q0P670 501 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 PRPF4BQ13523 1007 aaKnown RBP16.93■□□□□ 0.3
MCF2L-228ENST00000487354 GAS6Q14393 721 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 LPAL2Q16609 132 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 WDR44Q5JSH3 913 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 MAP4K3Q8IVH8 894 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 KIFC3Q9BVG8 833 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 TMEM60Q9H2L4 133 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 NDRG2Q9UN36 371 aaKnown RBP16.93■□□□□ 0.3
MCF2L-228ENST00000487354 GDAQ9Y2T3 454 aa16.93■□□□□ 0.3
MCF2L-228ENST00000487354 CNOT1A5YKK6 2376 aaKnown RBP16.92■□□□□ 0.3
MCF2L-228ENST00000487354 ARNTLO00327 626 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 NCAM2O15394 837 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 CDKL5O76039 1030 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 SEC24AO95486 1093 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 KRT2P35908 639 aa16.92■□□□□ 0.3
MCF2L-228ENST00000487354 TXKP42681 527 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms