RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SYT17Q9BSW7 474 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 ETAA1Q9NY74 926 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 CHKBQ9Y259 395 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 ANKRD33BA6NCL7 494 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 ATMINO43313 823 aaPredicted RBP14.16□□□□□ -0.14
USP40-214ENST00000483519 SMIM24O75264 130 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 CYP1A2P05177 515 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 HOXA10P31260 410 aaPredicted RBP14.16□□□□□ -0.14
USP40-214ENST00000483519 SNX1Q13596 522 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 SPDYAQ5MJ70 313 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 MFSD14BQ5SR56 506 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 THEMIS2Q5TEJ8 643 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 CEP128Q6ZU80 1094 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 MAEAQ7L5Y9 396 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 ZNF720Q7Z2F6 126 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 LONP2Q86WA8 852 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 SLC9A9Q8IVB4 645 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 MFN1Q8IWA4 741 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 BBOF1Q8ND07 529 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 UBN1Q9NPG3 1134 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 DNAJC17Q9NVM6 304 aaKnown RBP14.16□□□□□ -0.14
USP40-214ENST00000483519 CHORDC1Q9UHD1 332 aaPredicted RBP14.16□□□□□ -0.14
USP40-214ENST00000483519 SERPINB13Q9UIV8 391 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 GTF3C4Q9UKN8 822 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 ZMYND8Q9ULU4 1186 aaPredicted RBP14.16□□□□□ -0.14
USP40-214ENST00000483519 PHTF1Q9UMS5 762 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 ANKRD31Q8N7Z5 1873 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 FAM86B1E9PN63 330 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 MSH4O15457 936 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 P4HA2O15460 535 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 FOSP01100 380 aaPredicted RBP14.15□□□□□ -0.14
USP40-214ENST00000483519 FAM86B2P0C5J1 330 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 ALDH1B1P30837 517 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 SREBF1P36956 1147 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 PAPOLAP51003 745 aaKnown RBP14.15□□□□□ -0.14
USP40-214ENST00000483519 C1orf186Q6ZWK4 172 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 APBB1IPQ7Z5R6 666 aaPredicted RBP14.15□□□□□ -0.14
USP40-214ENST00000483519 CFAP61Q8NHU2 1237 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 DNAJC9Q8WXX5 260 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 ZNF653Q96CK0 615 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 KIAA1683Q9H0B3 1180 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 PAPOLBQ9NRJ5 636 aaKnown RBP14.15□□□□□ -0.14
USP40-214ENST00000483519 DPEP1P16444 411 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 IVDP26440 423 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 ADCY8P40145 1251 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 ADCY1Q08828 1119 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 MOGSQ13724 837 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 MYBPC2Q14324 1141 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 SPARCL1Q14515 664 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 RGS9BPQ6ZS82 235 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 SEPT14Q6ZU15 432 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 KSR1Q8IVT5 923 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 ARHGEF19Q8IW93 802 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 PSPC1Q8WXF1 523 aaKnown RBP14.15□□□□□ -0.14
USP40-214ENST00000483519 GPR101Q96P66 508 aaPredicted RBP14.15□□□□□ -0.14
USP40-214ENST00000483519 TBC1D10AQ9BXI6 508 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 VCXQ9H320 206 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 TUFT1Q9NNX1 390 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 RGL1Q9NZL6 768 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 PIM2Q9P1W9 311 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 EMSYQ7Z589 1322 aa14.15□□□□□ -0.14
USP40-214ENST00000483519 EIF4E1BA6NMX2 242 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 HNRNPCL1O60812 293 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 ASMTLO95671 621 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 PDHA1P08559 390 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 CETPP11597 493 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 CNGA1P29973 690 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 PTDSS1P48651 473 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 DNAJC3Q13217 504 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 TNIP1Q15025 636 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 TMED2Q15363 201 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 MUM1Q2TAK8 710 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 RELL1Q8IUW5 271 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 SYCP3Q8IZU3 236 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 EPS8L1Q8TE68 723 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 BTBD6Q96KE9 485 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 PCDHB18PQ96TA0 734 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 DCLRE1BQ9H816 532 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 TRAFD1O14545 582 aaPredicted RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 IL1R1P14778 569 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 CIITAP33076 1130 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 WDR4P57081 412 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 ROR2Q01974 943 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 RBBP8NLQ8NC74 664 aaPredicted RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 CHST7Q9NS84 486 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 EURLQ9NYK6 297 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 NOCTQ9UK39 431 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 GSTTP1A0A1W2PQM5 241 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 SGPL1O95470 568 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 ABHD2P08910 425 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 CHRNB2P17787 502 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 GM2AP17900 193 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 SLC18A1P54219 525 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 GNPTABQ3T906 1256 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 ODR4Q5SWX8 454 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 CWF19L1Q69YN2 538 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 ZNF449Q6P9G9 518 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 NOP9Q86U38 636 aaKnown RBP14.14□□□□□ -0.15
USP40-214ENST00000483519 RDH13Q8NBN7 331 aa14.14□□□□□ -0.15
USP40-214ENST00000483519 TEKT4Q8WW24 435 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms