RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 PAGE5Q96GU1 130 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 GPR62Q9BZJ7 368 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 GDPD2Q9HCC8 539 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 CLEC1BQ9P126 229 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 CACNG4Q9UBN1 327 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 CPSF3Q9UKF6 684 aaKnown RBP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 SSX2IPQ9Y2D8 614 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 TISP43B9A030 160 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 H3BQ06 376 aaPredicted RBP19.62■□□□□ 0.73
HDAC6-225ENST00000483506 CLASP2O75122 1294 aaKnown RBP19.62■□□□□ 0.73
HDAC6-225ENST00000483506 URODP06132 367 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 SYKP43405 635 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 GLUD2P49448 558 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 CUL4BQ13620 913 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 POSTNQ15063 836 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 ENOX2Q16206 610 aaKnown RBP19.62■□□□□ 0.73
HDAC6-225ENST00000483506 FAM26FQ5R3K3 315 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 ZBTB41Q5SVQ8 909 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 KIAA0319Q5VV43 1072 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 STXBP4Q6ZWJ1 553 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 EPM2AIP1Q7L775 607 aaPredicted RBP19.62■□□□□ 0.73
HDAC6-225ENST00000483506 TAS1R1Q7RTX1 841 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 FSIP1Q8NA03 581 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 AUTS2Q8WXX7 1259 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 DDX27Q96GQ7 796 aaKnown RBP19.62■□□□□ 0.73
HDAC6-225ENST00000483506 IKZF4Q9H2S9 585 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 GOLPH3LQ9H4A5 285 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 TMEM206Q9H813 350 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 MRPL17Q9NRX2 175 aaKnown RBP19.62■□□□□ 0.73
HDAC6-225ENST00000483506 ANK1P16157 1881 aa19.62■□□□□ 0.73
HDAC6-225ENST00000483506 UBE4BO95155 1302 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 TADA2AO75478 443 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 CASP1P29466 404 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 AFMP43652 599 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 NDUFV1P49821 464 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 CLCNKBP51801 687 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 ELAVL2Q12926 359 aaKnown RBP19.61■□□□□ 0.73
HDAC6-225ENST00000483506 ZBTB6Q15916 424 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 USP41Q3LFD5 358 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 DCLRE1AQ6PJP8 1040 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 CD300LGQ6UXG3 332 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 CD302Q8IX05 232 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 GRAMD1CQ8IYS0 662 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 GLIS3Q8NEA6 775 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 RABGGTAQ92696 567 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 BLZF1Q9H2G9 400 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 RPF1Q9H9Y2 349 aaKnown RBP19.61■□□□□ 0.73
HDAC6-225ENST00000483506 RXFP1Q9HBX9 757 aa19.61■□□□□ 0.73
HDAC6-225ENST00000483506 AGO2Q9UKV8 859 aaKnown RBP19.61■□□□□ 0.73
HDAC6-225ENST00000483506 GRXCR2A6NFK2 248 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 KLRC4O43908 158 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 PRPF6O94906 941 aaKnown RBP19.6■□□□□ 0.73
HDAC6-225ENST00000483506 SRGAP2BP0DMP2 458 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 CYP3A5P20815 502 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 GARTP22102 1010 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 RPL9P32969 192 aaKnown RBP19.6■□□□□ 0.73
HDAC6-225ENST00000483506 HOXD13P35453 343 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 PPP2R3AQ06190 1150 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 SMRP1Q8NCR6 262 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 ZNF507Q8TCN5 953 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 HPS3Q969F9 1004 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 GOLGA2P5Q9HBQ8 144 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 CD207Q9UJ71 328 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 BARX2Q9UMQ3 279 aaPredicted RBP19.6■□□□□ 0.73
HDAC6-225ENST00000483506 HCFC2Q9Y5Z7 792 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 VWA8A3KMH1 1905 aa19.6■□□□□ 0.73
HDAC6-225ENST00000483506 LACTBL1A8MY62 500 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 C1RP00736 705 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 CNPP09543 421 aaKnown RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 ANP32AP39687 249 aaKnown RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 RBM10P98175 930 aaKnown RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 SMAD4Q13485 552 aaKnown RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 BMT2Q1RMZ1 405 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 PTCRAQ6ISU1 281 aaPredicted RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 CRELD2Q6UXH1 353 aaPredicted RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 EP400NLQ6ZTU2 488 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 PPFIBP1Q86W92 1011 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 C3orf58Q8NDZ4 430 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 SLC22A17Q8WUG5 538 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 POMGNT1Q8WZA1 660 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 CASP10Q92851 521 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 C18orf25Q96B23 403 aaPredicted RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 KLHL5Q96PQ7 755 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 COL25A1Q9BXS0 654 aaPredicted RBP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 EMILIN2Q9BXX0 1053 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 ASB7Q9H672 318 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.59■□□□□ 0.73
HDAC6-225ENST00000483506 DERAQ9Y315 318 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 MUC3AQ02505 3323 aa19.59■□□□□ 0.73
HDAC6-225ENST00000483506 TCF20Q9UGU0 1960 aaKnown RBP19.58■□□□□ 0.73
HDAC6-225ENST00000483506 PODXLO00592 558 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 KIAA0391O15091 583 aaKnown RBP19.58■□□□□ 0.72
HDAC6-225ENST00000483506 B3GAT3O94766 335 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 LRPAP1P30533 357 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 ACOT2P49753 483 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 ANKRD54Q6NXT1 300 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 KRBA2Q6ZNG9 492 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 SYCP3Q8IZU3 236 aa19.58■□□□□ 0.72
HDAC6-225ENST00000483506 ADAMTS19Q8TE59 1207 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms