RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 TNFSF9P41273 254 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 GCLMP48507 274 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 DLG4P78352 724 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 FAM189BP81408 668 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 ZBED6P86452 979 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 KCNMA1Q12791 1236 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 TMEM132DQ14C87 1099 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 LRRC26Q2I0M4 334 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 SGSM1Q2NKQ1 1148 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 CBWD6Q4V339 395 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 WDR44Q5JSH3 913 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 CBWD3Q5JTY5 395 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 CBWD5Q5RIA9 395 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 TRIM65Q6PJ69 517 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 RPUSD2Q8IZ73 545 aaKnown RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 CCDC112Q8NEF3 446 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 ZSWIM2Q8NEG5 633 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 BEST2Q8NFU1 509 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 PLEKHO2Q8TD55 490 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 SYN2Q92777 582 aaPredicted RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 PANX2Q96RD6 677 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 ADAM2Q99965 735 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 NAA15Q9BXJ9 866 aaKnown RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 EIF2AQ9BY44 585 aaKnown RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 TTYH3Q9C0H2 523 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 MMRN2Q9H8L6 949 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 SNTG2Q9NY99 539 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 UBQLN1Q9UMX0 589 aaKnown RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 ATP11BQ9Y2G3 1177 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 LUC7L2Q9Y383 392 aaKnown RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 R3HCC1Q9Y3T6 440 aaKnown RBP10.98□□□□□ -0.65
USP39-215ENST00000481409 ANK1P16157 1881 aa10.98□□□□□ -0.65
USP39-215ENST00000481409 CARNS1A5YM72 827 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 LACTBL1A8MY62 500 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 C9IYK1 514 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 PHACTR2O75167 634 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 RECQL4O94761 1208 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 TBXAS1P24557 533 aaPredicted RBP10.97□□□□□ -0.65
USP39-215ENST00000481409 GCNT1Q02742 428 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 TRPC3Q13507 836 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 MBTPS1Q14703 1052 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 ZBTB6Q15916 424 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 ZBTB41Q5SVQ8 909 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 KLHDC7AQ5VTJ3 777 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 CNKSR3Q6P9H4 555 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 CACNA2D4Q7Z3S7 1137 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 CDR2LQ86X02 465 aaPredicted RBP10.97□□□□□ -0.65
USP39-215ENST00000481409 TMEM199Q8N511 208 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 TTC39CQ8N584 583 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 CEP120Q8N960 986 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 SMG8Q8ND04 991 aaKnown RBP10.97□□□□□ -0.65
USP39-215ENST00000481409 OR8K1Q8NGG5 319 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 LMO3Q8TAP4 145 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 TRIM44Q96DX7 344 aaPredicted RBP10.97□□□□□ -0.65
USP39-215ENST00000481409 HTATIP2Q9BUP3 242 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 INTS2Q9H0H0 1204 aaKnown RBP10.97□□□□□ -0.65
USP39-215ENST00000481409 TMX1Q9H3N1 280 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 NXF3Q9H4D5 531 aaKnown RBP10.97□□□□□ -0.65
USP39-215ENST00000481409 VRTNQ9H8Y1 702 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 KANSL3Q9P2N6 904 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 APEX2Q9UBZ4 518 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 PRKAG2Q9UGJ0 569 aa10.97□□□□□ -0.65
USP39-215ENST00000481409 PDCD11Q14690 1871 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 ABHD14A-ACY1A0A1B0GW23 586 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 NBNO60934 754 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 MFAP3LO75121 409 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 GYPCP04921 128 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 FAM163BP0C2L3 166 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 P4HA1P13674 534 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 UCHL3P15374 230 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 ATF7P17544 494 aaPredicted RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 HNRNPH3P31942 346 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 DEKP35659 375 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 PNPLA4P41247 253 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 PIK3CAP42336 1068 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 MFAP3P55082 362 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 OSTNP61366 133 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 RBP5P82980 135 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 TFAMQ00059 246 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 CDK17Q00537 523 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 BIRC3Q13489 604 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 NCOA4Q13772 614 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 SEZ6Q53EL9 994 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 TDRD10Q5VZ19 366 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 JADE1Q6IE81 842 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 MFSD5Q6N075 450 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 TRAPPC11Q7Z392 1133 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 ZNF598Q86UK7 904 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 ECHDC2Q86YB7 292 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 LRRC52Q8N7C0 313 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 SPC24Q8NBT2 197 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 ZNF516Q92618 1163 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 FAM212AQ96EL1 285 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 KIF12Q96FN5 646 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 NT5C1BQ96P26 610 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 RPS6KC1Q96S38 1066 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 DNAJC7Q99615 494 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 LSM14BQ9BX40 385 aaKnown RBP10.96□□□□□ -0.65
USP39-215ENST00000481409 STK33Q9BYT3 514 aa10.96□□□□□ -0.65
USP39-215ENST00000481409 GANQ9H2C0 597 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms