RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.72■□□□□ 0.27
LIMS3-203ENST00000480744 ARHGAP28Q9P2N2 729 aa16.72■□□□□ 0.27
LIMS3-203ENST00000480744 RBM19Q9Y4C8 960 aaKnown RBP16.72■□□□□ 0.27
LIMS3-203ENST00000480744 TMEM189-UBE2V1I3L0A0 370 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 CD2BP2O95400 341 aaKnown RBP16.71■□□□□ 0.27
LIMS3-203ENST00000480744 PAPLNO95428 1278 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 HNRNPA1P09651 372 aaKnown RBP eCLIP16.71■□□□□ 0.27
LIMS3-203ENST00000480744 LAMP2P13473 410 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 FGFR3P22607 806 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 TKTP29401 623 aaKnown RBP16.71■□□□□ 0.27
LIMS3-203ENST00000480744 BRCC3P46736 316 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 NTHL1P78549 312 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 SOX4Q06945 474 aaPredicted RBP16.71■□□□□ 0.27
LIMS3-203ENST00000480744 SLC44A3Q8N4M1 653 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 SLC7A14Q8TBB6 771 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 PNMA5Q96PV4 448 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 UPF2Q9HAU5 1272 aaKnown RBP16.71■□□□□ 0.27
LIMS3-203ENST00000480744 ANKFY1Q9P2R3 1169 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 DAXXQ9UER7 740 aaPredicted RBP16.71■□□□□ 0.27
LIMS3-203ENST00000480744 CA14Q9ULX7 337 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 CDY1Q9Y6F8 540 aa16.71■□□□□ 0.27
LIMS3-203ENST00000480744 TRAPPC3O43617 180 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 PI15O43692 258 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 XYLBO75191 536 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 MCF2P10911 925 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 NPR3P17342 541 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 AOC1P19801 751 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 GUCY2CP25092 1073 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 STRN3Q13033 797 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 UPP1Q16831 310 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 AXDND1Q5T1B0 1012 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-203ENST00000480744 MPZL3Q6UWV2 235 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 C3orf58Q8NDZ4 430 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 NXPE3Q969Y0 559 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 DDX27Q96GQ7 796 aaKnown RBP16.7■□□□□ 0.26
LIMS3-203ENST00000480744 SNX27Q96L92 541 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 ACAP3Q96P50 834 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 TIPINQ9BVW5 301 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 C17orf75Q9HAS0 396 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 PTPRHQ9HD43 1115 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 SLC38A7Q9NVC3 462 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 MTRRQ9UBK8 725 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 SMC3Q9UQE7 1217 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 NOTCH4Q99466 2003 aa16.7■□□□□ 0.26
LIMS3-203ENST00000480744 PODXLO00592 558 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 GFRA3O60609 400 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 SRFP11831 508 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 MATR3P43243 847 aaKnown RBP eCLIP16.69■□□□□ 0.26
LIMS3-203ENST00000480744 SMTNP53814 917 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 CACNB1Q02641 598 aaPredicted RBP16.69■□□□□ 0.26
LIMS3-203ENST00000480744 HTR4Q13639 388 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 RAB33AQ14088 237 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 CD300LGQ6UXG3 332 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 RSPO2Q6UXX9 243 aaPredicted RBP16.69■□□□□ 0.26
LIMS3-203ENST00000480744 ZBTB45Q96K62 511 aaPredicted RBP16.69■□□□□ 0.26
LIMS3-203ENST00000480744 ZMAT2Q96NC0 199 aaKnown RBP16.69■□□□□ 0.26
LIMS3-203ENST00000480744 WNT16Q9UBV4 365 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 NUMBLQ9Y6R0 609 aa16.69■□□□□ 0.26
LIMS3-203ENST00000480744 NPHP3-ACAD11A0A0J9YXS1 232 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 PLA2G4BP0C869 781 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 PLS3P13797 630 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 PROZP22891 400 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 HOXA9P31269 272 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 SEZ6Q53EL9 994 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 XKR4Q5GH76 650 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 HYIQ5T013 277 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 ALKAL1Q6UXT8 129 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 ANKS3Q6ZW76 656 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 SYT2Q8N9I0 419 aaPredicted RBP16.68■□□□□ 0.26
LIMS3-203ENST00000480744 GPR152Q8TDT2 470 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 SPIRE2Q8WWL2 714 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 C18orf25Q96B23 403 aaPredicted RBP16.68■□□□□ 0.26
LIMS3-203ENST00000480744 RTP3Q9BQQ7 232 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 HCFC1R1Q9NWW0 138 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 CDH7Q9ULB5 785 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 NUB1Q9Y5A7 615 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 BACE2Q9Y5Z0 518 aa16.68■□□□□ 0.26
LIMS3-203ENST00000480744 MIA3Q5JRA6 1907 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 KRBA1A5PL33 1030 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ANHXE9PGG2 379 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ABLIM1O14639 778 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 KCNE1P15382 129 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 SLC12A3P55017 1021 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ARPP19P56211 112 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 DHX8Q14562 1220 aaKnown RBP16.67■□□□□ 0.26
LIMS3-203ENST00000480744 NOLC1Q14978 699 aaKnown RBP eCLIP16.67■□□□□ 0.26
LIMS3-203ENST00000480744 VARS2Q5ST30 1063 aaKnown RBP16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ARL6IP4Q66PJ3 421 aaKnown RBP16.67■□□□□ 0.26
LIMS3-203ENST00000480744 TMEM161BQ8NDZ6 487 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ITFG1Q8TB96 612 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 BICD1Q96G01 975 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 NTPCRQ9BSD7 190 aaKnown RBP16.67■□□□□ 0.26
LIMS3-203ENST00000480744 CNTN3Q9P232 1028 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 KCNG1Q9UIX4 513 aa16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ZFP37Q9Y6Q3 630 aaPredicted RBP16.67■□□□□ 0.26
LIMS3-203ENST00000480744 ZFHX2Q9C0A1 2572 aaPredicted RBP16.66■□□□□ 0.26
LIMS3-203ENST00000480744 TOM1L1O75674 476 aa16.66■□□□□ 0.26
LIMS3-203ENST00000480744 MAPTP10636 758 aaKnown RBP16.66■□□□□ 0.26
LIMS3-203ENST00000480744 MCM2P49736 904 aa16.66■□□□□ 0.26
LIMS3-203ENST00000480744 UVSSAQ2YD98 709 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms