RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 FAM47CQ5HY64 1035 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 TMEM63BQ5T3F8 832 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 GDF6Q6KF10 455 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SWSAP1Q6NVH7 229 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 FAM173BQ6P4H8 233 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SASS6Q6UVJ0 657 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 CXCL17Q6UXB2 119 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 ABHD15Q6UXT9 468 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 OTUD6AQ7L8S5 288 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 VN1R5Q7Z5H4 357 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 POU5F2Q8N7G0 328 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 C7orf31Q8N865 590 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 PHC3Q8NDX5 983 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 AFAP1L1Q8TED9 768 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 GJA10Q969M2 543 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 ASIC4Q96FT7 647 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 CALML4Q96GE6 196 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 PAWRQ96IZ0 340 aaKnown RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 SPATA32Q96LK8 384 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 USP28Q96RU2 1077 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 HTATIP2Q9BUP3 242 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 ADAM19Q9H013 955 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 NT5C3AQ9H0P0 336 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 TUFT1Q9NNX1 390 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 NRBP2Q9NSY0 501 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 TMEM39AQ9NV64 488 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 VAV3Q9UKW4 847 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 TLR6Q9Y2C9 796 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 MORC2Q9Y6X9 1032 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-209ENST00000479532 KAT6AQ92794 2004 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 WDR81Q562E7 1941 aa6.87□□□□□ -1.31
SF3B1-209ENST00000479532 IGSF9BQ9UPX0 1349 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 IGKV6D-21A0A0A0MT36 114 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 C17orf102A2RUQ5 167 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 RRN3P2A6NIE6 340 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 CTAGE5O15320 804 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 HBP1O60381 514 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 CUTAO60888 179 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 CCNE2O96020 404 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 RPLP2P05387 115 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 PTGS1P23219 599 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 MARK3P27448 753 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 MARCKSP29966 332 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 EIF4A3P38919 411 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 CCT6AP40227 531 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ME1P48163 572 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ARID5AQ03989 594 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 FAM160A1Q05DH4 1040 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 PPP2R3AQ06190 1150 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ITGA7Q13683 1181 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ZNF423Q2M1K9 1284 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ZNF484Q5JVG2 852 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 CCSAPQ6IQ19 270 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 NFRKBQ6P4R8 1299 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 DTX1Q86Y01 620 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 TPH2Q8IWU9 490 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 EXOC8Q8IYI6 725 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 C4orf32Q8N8J7 132 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 IGSF22Q8N9C0 903 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 LINC00301Q8NCQ3 95 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 UBXN4Q92575 508 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 RHOVQ96L33 236 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 GBP4Q96PP9 640 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 EIF2AK1Q9BQI3 630 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 JPH2Q9BR39 696 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 PYM1Q9BRP8 204 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 LXNQ9BS40 222 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 POLR3CQ9BUI4 534 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 MRPL18Q9H0U6 180 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 BCAS3Q9H6U6 928 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ZSWIM4Q9H7M6 989 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 GEMIN8Q9NWZ8 242 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 CCDC39Q9UFE4 941 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 ZDHHC9Q9Y397 364 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 PPME1Q9Y570 386 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 SRPRBQ9Y5M8 271 aaKnown RBP6.86□□□□□ -1.31
SF3B1-209ENST00000479532 TCHHQ07283 1943 aa6.86□□□□□ -1.31
SF3B1-209ENST00000479532 COL1A2P08123 1366 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 NRCAMQ92823 1304 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 DCDC2CA8MYV0 355 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 GOLGA6L22H0YM25 854 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 ARVCFO00192 962 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 B3GALT4O96024 378 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 PF4P02776 101 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 COL6A1P12109 1028 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 GLB1P16278 677 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 EPHA1P21709 976 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 RPA1P27694 616 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 PSMC6P62333 389 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 PRKCEQ02156 737 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 CYP4A11Q02928 519 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 SPIRE1Q08AE8 756 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 PPFIA1Q13136 1202 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 PTPAQ15257 358 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 ZRSR1Q15695 479 aaKnown RBP6.85□□□□□ -1.31
SF3B1-209ENST00000479532 FBLN7Q53RD9 439 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 XKR3Q5GH77 459 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 B3GNT9Q6UX72 402 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 SLC39A5Q6ZMH5 540 aa6.85□□□□□ -1.31
SF3B1-209ENST00000479532 CLEC17AQ6ZS10 378 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms