RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MKNK1Q9BUB5 465 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 CAPS2Q9BXY5 557 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 ANKEF1Q9NU02 776 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 FAM49BQ9NUQ9 324 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 CCL15-CCL14A0A0B4J2E2 113 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 FZD9O00144 591 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 YARSP54577 528 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 ATP11AP98196 1134 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 CCL15Q16663 113 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 HEXIM2Q96MH2 286 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 TMEM8AQ9HCN3 771 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 WNK3Q9BYP7 1800 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 PFASO15067 1338 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 CDK5RAP2Q96SN8 1893 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 TRIM66O15016 1216 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 NEDD9Q14511 834 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 LRRC14Q15048 493 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 PLCB4Q15147 1175 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 LIN9Q5TKA1 542 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 ARMC9Q7Z3E5 817 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 ANKRD13AQ8IZ07 590 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 FMO2Q99518 471 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 MPHOSPH6Q99547 160 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 SYT17Q9BSW7 474 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 MIS12Q9H081 205 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 NEUROG2Q9H2A3 272 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 ADARB2Q9NS39 739 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 CWC15Q9P013 229 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 GGT7Q9UJ14 662 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 RAB21Q9UL25 225 aa14.68□□□□□ -0.06
CCDC88A-211ENST00000471947 CAPSQ13938 189 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 TDRD10Q5VZ19 366 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 HSPH1Q92598 858 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 MCEEQ96PE7 176 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 PARP2Q9UGN5 583 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 CTSHP09668 335 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 GTF2BQ00403 316 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 FBXO25Q8TCJ0 367 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 PBKQ96KB5 322 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 RNPEPQ9H4A4 650 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 RASAL2Q9UJF2 1139 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 TNNC2P02585 160 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 PDGFRBP09619 1106 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 OSBPP22059 807 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 SYN2Q92777 582 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 CEP83Q9Y592 693 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 NUB1Q9Y5A7 615 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 PTPRJQ12913 1337 aa14.67□□□□□ -0.06
CCDC88A-211ENST00000471947 CSPG5O95196 566 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 INSRRP14616 1297 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 ATP4AP20648 1035 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 ZNF131P52739 623 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 LAMTOR4Q0VGL1 99 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 ZKSCAN8Q15776 578 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 COBLL1Q53SF7 1204 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 ZNF516Q92618 1163 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 C9orf72Q96LT7 481 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 POC1B-GALNT4F8VUJ3 575 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 RTN2O75298 545 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 KRT1P04264 644 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 TMEM253P0C7T8 217 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 LIG3P49916 1009 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 BMT2Q1RMZ1 405 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 ABHD15Q6UXT9 468 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 MAP4K3Q8IVH8 894 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 TAF1DQ9H5J8 278 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 SETD4Q9NVD3 440 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 DBR1Q9UK59 544 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 PJA2O43164 708 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 MAPTP10636 758 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 MAGOHP61326 146 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 FMO1Q01740 532 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 DNAJC24Q6P3W2 148 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 MMGT1Q8N4V1 131 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 RPF1Q9H9Y2 349 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 KCND2Q9NZV8 630 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 CALCOCO1Q9P1Z2 691 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 PCDHGC5Q9Y5F6 944 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 ANKRD31Q8N7Z5 1873 aa14.66□□□□□ -0.06
CCDC88A-211ENST00000471947 SYF2O95926 243 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 ITGB3P05106 788 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 VIMP08670 466 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 RWDD2BP57060 319 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 RPL7AP62424 266 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 GPAT2Q6NUI2 795 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 ERO1BQ86YB8 467 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 MICALL1Q8N3F8 863 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 NGRNQ9NPE2 291 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 AGAP1Q9UPQ3 857 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 CELF2O95319 508 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 TUBBP07437 444 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 CETN2P41208 172 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 MTMR14Q8NCE2 650 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 MAP2K7O14733 419 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 RALAP11233 206 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 PPFIA1Q13136 1202 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 DENND2CQ68D51 928 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms