RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PLIN2Q99541 437 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 VN1R3Q9BXE9 311 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 FAM126AQ9BYI3 521 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 SCAND2PQ9GZW5 306 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 NRDE2Q9H7Z3 1164 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 RAB23Q9ULC3 237 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PCDHA7Q9UN72 937 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PIN4Q9Y237 131 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 MTF2Q9Y483 593 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 NUMBLQ9Y6R0 609 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 ANKRD11Q6UB99 2663 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 LRP3O75074 770 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 PROS1P07225 676 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 SRGAP2CP0DJJ0 459 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 CYP11B2P19099 503 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 SLC44A4Q53GD3 710 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 LAIR1Q6GTX8 287 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 RSPO2Q6UXX9 243 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 RNF149Q8NC42 400 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 MCPH1Q8NEM0 835 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 LRRC15Q8TF66 581 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 SMG7Q92540 1137 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 MRPL17Q9NRX2 175 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 AGPAT5Q9NUQ2 364 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 FAM105AQ9NUU6 356 aa13.11□□□□□ -0.31
SQSTM1-206ENST00000466342 CNOT1A5YKK6 2376 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 ZZEF1O43149 2961 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 RFPL2O75678 378 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 PAPLNO95428 1278 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 SSBP05455 408 aaKnown RBP eCLIP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 PLA2G4BP0C869 781 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 AXLP30530 894 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 SLC12A3P55017 1021 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 MLF2Q15773 248 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 ZBTB41Q5SVQ8 909 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 N4BP2L1Q5TBK1 243 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 SHC4Q6S5L8 630 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 TSSK4Q6SA08 328 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 GLB1LQ6UWU2 654 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 CCDC73Q6ZRK6 1079 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 IFNLR1Q8IU57 520 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 SYT2Q8N9I0 419 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 HDAC7Q8WUI4 952 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 CLDN23Q96B33 292 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 PGBD4Q96DM1 585 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 RPP25Q9BUL9 199 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 PIDD1Q9HB75 910 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 LTB4R2Q9NPC1 389 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 BLOC1S4Q9NUP1 217 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 TBC1D13Q9NVG8 400 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 DNAJB4Q9UDY4 337 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 STK17AQ9UEE5 414 aa13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 ZFP37Q9Y6Q3 630 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-206ENST00000466342 A0A087X0B3 334 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 NCAM2O15394 837 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 ADH1AP07327 375 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RETP07949 1114 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 KCNA4P22459 653 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 HOXA11P31270 313 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 ARL2P36404 184 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 SLC11A1P49279 550 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 PTENP60484 403 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RNASELQ05823 741 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 NCBP1Q09161 790 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 TFDP1Q14186 410 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 NOMO2Q5JPE7 1267 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RRAGBQ5VZM2 374 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RESP18Q5W5W9 173 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RINT1Q6NUQ1 792 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 C1orf186Q6ZWK4 172 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 MAEAQ7L5Y9 396 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 MRPL10Q7Z7H8 261 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 CELF5Q8N6W0 485 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 CNNM3Q8NE01 707 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 ST13P5Q8NFI4 369 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 ASAP3Q8TDY4 903 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 LARP4BQ92615 738 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RAD54LQ92698 747 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 FGF14Q92915 247 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 ZNF707Q96C28 371 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 NELL2Q99435 816 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 RUSC1Q9BVN2 902 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 TIPINQ9BVW5 301 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 POLR3FQ9H1D9 316 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 MINDY3Q9H8M7 445 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 GDPD2Q9HCC8 539 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 GPRC5CQ9NQ84 441 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 SEMA4GQ9NTN9 838 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 KCND2Q9NZV8 630 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 SSX2IPQ9Y2D8 614 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 PCDHB2Q9Y5E7 798 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 SPEGQ15772 3267 aa13.09□□□□□ -0.31
SQSTM1-206ENST00000466342 GREB1Q4ZG55 1949 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 OFD1O75665 1012 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 ERLIN2O94905 339 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 ALDH2P05091 517 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 CD72P21854 359 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 GLRA2P23416 452 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 GUCY2CP25092 1073 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 STAT6P42226 847 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms