RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 AP1G1O43747 822 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 CAND2O75155 1236 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 PPFIA4O75335 1185 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 PEX11BO96011 259 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 ALAS1P13196 640 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 PDCP20941 246 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 ALDH1A3P47895 512 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 TBX4P57082 545 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 KRTAP10-2P60368 255 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 CREMQ03060 361 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 FOXE3Q13461 319 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 RAB39AQ14964 217 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 C3orf36Q3SXR2 165 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 RABL3Q5HYI8 236 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 SEM1Q6ZVN7 128 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 SPRED1Q7Z699 444 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 TTC7BQ86TV6 843 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 SLC35B2Q8TB61 432 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 STON2Q8WXE9 905 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 LRGUKQ96M69 825 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 PLEKHG4BQ96PX9 1271 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 REXO4Q9GZR2 422 aaKnown RBP5.3□□□□□ -1.56
CLK1-208ENST00000464454 MAN1C1Q9NR34 630 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 SERPINB13Q9UIV8 391 aa5.3□□□□□ -1.56
CLK1-208ENST00000464454 VSTM5A8MXK1 200 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 ERC2O15083 957 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 POMCP01189 267 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 AMHP03971 560 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 AMY1AP04745 511 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 SPATA31D3P0C874 917 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 FPR1P21462 350 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 EDNRBP24530 442 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 PCSK1P29120 753 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 CTXN1P60606 82 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 RAP2BP61225 183 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 ATP8B2P98198 1209 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 TOB2Q14106 344 aaPredicted RBP5.29□□□□□ -1.56
CLK1-208ENST00000464454 PUM1Q14671 1186 aaKnown RBP eCLIP5.29□□□□□ -1.56
CLK1-208ENST00000464454 MIIPQ5JXC2 388 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 THEMIS2Q5TEJ8 643 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 SPATA31D4Q6ZUB0 917 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 PLXDC1Q8IUK5 500 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 NLGN4YQ8NFZ3 816 aaPredicted RBP5.29□□□□□ -1.56
CLK1-208ENST00000464454 SLC35G2Q8TBE7 412 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 CACTINQ8WUQ7 758 aaKnown RBP5.29□□□□□ -1.56
CLK1-208ENST00000464454 HPS3Q969F9 1004 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 TMX3Q96JJ7 454 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 VPS11Q9H270 941 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 PRDM11Q9NQV5 511 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 ANLNQ9NQW6 1124 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 OBP2AQ9NY56 170 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 CALCOCO1Q9P1Z2 691 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 CEP72Q9P209 647 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 PCDHA13Q9Y5I0 950 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 ACTL7AQ9Y615 435 aa5.29□□□□□ -1.56
CLK1-208ENST00000464454 MATN3O15232 486 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 SLC16A6O15403 523 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 GNALP38405 381 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 TARDBPQ13148 414 aaKnown RBP eCLIP5.28□□□□□ -1.56
CLK1-208ENST00000464454 IL10RAQ13651 578 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 ARHGAP29Q52LW3 1261 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 ATAT1Q5SQI0 421 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 DACT2Q5SW24 774 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 ZNF529Q6P280 563 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 GADL1Q6ZQY3 521 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 USP45Q70EL2 814 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 CATIPQ7Z7H3 387 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 DGKHQ86XP1 1220 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 PRR18Q8N4B5 295 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 ZGPATQ8N5A5 531 aaKnown RBP5.28□□□□□ -1.56
CLK1-208ENST00000464454 RNF169Q8NCN4 708 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 NSUN6Q8TEA1 469 aaKnown RBP5.28□□□□□ -1.56
CLK1-208ENST00000464454 ZNF503Q96F45 646 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 CLPTM1LQ96KA5 538 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 MAP3K14Q99558 947 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 GTPBP4Q9BZE4 634 aaKnown RBP5.28□□□□□ -1.56
CLK1-208ENST00000464454 C11orf54Q9H0W9 315 aaPredicted RBP5.28□□□□□ -1.56
CLK1-208ENST00000464454 SLC12A5Q9H2X9 1139 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 GABBR1Q9UBS5 961 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 SORCS3Q9UPU3 1222 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 POLHQ9Y253 713 aa5.28□□□□□ -1.56
CLK1-208ENST00000464454 RUVBL1Q9Y265 456 aaKnown RBP5.28□□□□□ -1.56
CLK1-208ENST00000464454 GRXCR1A8MXD5 290 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 CTNND1O60716 968 aaKnown RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 SCAF4O95104 1147 aaKnown RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 ARIH2O95376 493 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 KRT18P05783 430 aaKnown RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 C1SP09871 688 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 MTHFD1P11586 935 aaKnown RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 TNFRSF1AP19438 455 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 APOBEC3AP31941 199 aaPredicted RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 NHLH2Q02577 135 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 TUBA3CQ13748 450 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 CCSAPQ6IQ19 270 aaPredicted RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 TUBA3EQ6PEY2 450 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 B3GNT9Q6UX72 402 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 GDF7Q7Z4P5 450 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 CCAR1Q8IX12 1150 aaKnown RBP5.27□□□□□ -1.57
CLK1-208ENST00000464454 IFI44Q8TCB0 444 aa5.27□□□□□ -1.57
CLK1-208ENST00000464454 CPT1CQ8TCG5 803 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms