RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MAPK6Q16659 721 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 CYP1B1Q16678 543 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 SGSM1Q2NKQ1 1148 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 USH1GQ495M9 461 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 MDH1BQ5I0G3 518 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 TBC1D9BQ66K14 1250 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 PPP1R21Q6ZMI0 780 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 ARHGAP22Q7Z5H3 698 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 TRABDQ9H4I3 376 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 KLHL11Q9NVR0 708 aa12.46□□□□□ -0.41
CPSF3-202ENST00000460593 EMSYQ7Z589 1322 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 ADGRA3Q8IWK6 1321 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 LOC102724428A0A0B4J2F2 783 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 SLC16A3O15427 465 aaKnown RBP12.46□□□□□ -0.42
CPSF3-202ENST00000460593 EDF1O60869 148 aaKnown RBP12.46□□□□□ -0.42
CPSF3-202ENST00000460593 CDH16O75309 829 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 HSPA6P17066 643 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 SIK1P57059 783 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 SF3B3Q15393 1217 aaKnown RBP12.46□□□□□ -0.42
CPSF3-202ENST00000460593 TTC7BQ86TV6 843 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 TPH2Q8IWU9 490 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 DRAXINQ8NBI3 349 aaPredicted RBP12.46□□□□□ -0.42
CPSF3-202ENST00000460593 MAML1Q92585 1016 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 VCXQ9H320 206 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 DCLRE1BQ9H816 532 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 KIAA1586Q9HCI6 787 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 KANSL3Q9P2N6 904 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 STARD13Q9Y3M8 1113 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 ATAD5Q96QE3 1844 aa12.46□□□□□ -0.42
CPSF3-202ENST00000460593 ITGB4P16144 1822 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 hCG_2014768A0A024R1R8 64 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 ETS1P14921 441 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 AMPD1P23109 780 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 HOXA13P31271 388 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-202ENST00000460593 SCNN1BP51168 640 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 CUL3Q13618 768 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 IZUMO3Q5VZ72 239 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 IRGCQ6NXR0 463 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 LRRC74BQ6ZQY2 392 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 INPP5DQ92835 1189 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 DYDC2Q96IM9 177 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 SH2D3AQ9BRG2 576 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 SAYSD1Q9NPB0 183 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 WHRNQ9P202 907 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 ARMCX1Q9P291 453 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 COL22A1Q8NFW1 1626 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-202ENST00000460593 PTPN4P29074 926 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 GSTT1P30711 240 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 PPP3CAQ08209 521 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 KIF22Q14807 665 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 NFIXQ14938 502 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 WASHC2DQ5SRD0 308 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 RINT1Q6NUQ1 792 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 RINLQ6ZS11 566 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 CLNKQ7Z7G1 428 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 TRABD2AQ86V40 505 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 CYTH2Q99418 400 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 LRRC19Q9H756 370 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.45□□□□□ -0.42
CPSF3-202ENST00000460593 STOML1Q9UBI4 398 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 SRP68Q9UHB9 627 aaKnown RBP12.45□□□□□ -0.42
CPSF3-202ENST00000460593 RABGAP1Q9Y3P9 1069 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 PCDHA1Q9Y5I3 950 aa12.45□□□□□ -0.42
CPSF3-202ENST00000460593 GTPBP10A4D1E9 387 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 GOLGA8SH3BPF8 625 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 GOLGA8MH3BSY2 632 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 USP1O94782 785 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ITIH2P19823 946 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 RASSF2P50749 326 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF543Q08ER8 600 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 PPP2R5CQ13362 524 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 THOC5Q13769 683 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 EFTUD2Q15029 972 aaKnown RBP eCLIP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 RASIP1Q5U651 963 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 LVRNQ6Q4G3 990 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ANKRD35Q8N283 1001 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 SHKBP1Q8TBC3 707 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 PSPC1Q8WXF1 523 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 GBP5Q96PP8 586 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 RBM15Q96T37 977 aaKnown RBP eCLIP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 WNT8AQ9H1J5 351 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 LRCH1Q9Y2L9 728 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 SH3BP1Q9Y3L3 701 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 DCTN3O75935 186 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 TJP3O95049 919 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 EYA4O95677 639 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 BMP3P12645 472 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ADRA1DP25100 572 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 UBXN2AP68543 259 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ARHGAP4P98171 946 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 QRICH1Q2TAL8 776 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ZC3H12AQ5D1E8 599 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 HHATQ5VTY9 493 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 ANKS1BQ7Z6G8 1248 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 PPM1KQ8N3J5 372 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 FBXO27Q8NI29 283 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 LMO3Q8TAP4 145 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 MAIP1Q8WWC4 291 aa12.44□□□□□ -0.42
CPSF3-202ENST00000460593 DHX38Q92620 1227 aaKnown RBP12.44□□□□□ -0.42
CPSF3-202ENST00000460593 GRAMD1AQ96CP6 724 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms